| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,479,458 – 13,479,522 |
| Length | 64 |
| Max. P | 0.646471 |
| Location | 13,479,458 – 13,479,522 |
|---|---|
| Length | 64 |
| Sequences | 4 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 93.18 |
| Shannon entropy | 0.10731 |
| G+C content | 0.49008 |
| Mean single sequence MFE | -13.68 |
| Consensus MFE | -11.12 |
| Energy contribution | -12.12 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.646471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13479458 64 - 27905053 CGCCAUUUGGUUUCUCUCUCGCUUCUGCAAUGUACCGUUGUAGCGUUGCAAUCCAAGAUGCCUC ........(((.(((.....((..((((((((...))))))))....))......))).))).. ( -12.80, z-score = -0.91, R) >droSim1.chr3R 19517917 63 + 27517382 -GCCAUUUGGUUUCUCUCUCGCUUCUGCAAUGUACCGUUGUAGCGUUGCAAUUCAAGAUGCCUC -.......(((.(((.....((..((((((((...))))))))....))......))).))).. ( -12.80, z-score = -1.08, R) >droYak2.chr3R 2047638 63 - 28832112 -GUCAUUUGGUUUCUCUCUCUCUUCUGCAAUGUACCGUUGUACCGUUGCAAACCGAGAUGCCUC -.......(((.((((.........((((((((((....))).)))))))....)))).))).. ( -14.62, z-score = -2.91, R) >droEre2.scaffold_4770 9593710 63 + 17746568 -GCCAUUUCGUUUCUCUCUCGCUUCUGCAAUGUACCGUUGUACCGUUGCAAUCCGAGAUGCCUC -...............(((((....((((((((((....))).)))))))...)))))...... ( -14.50, z-score = -2.96, R) >consensus _GCCAUUUGGUUUCUCUCUCGCUUCUGCAAUGUACCGUUGUACCGUUGCAAUCCAAGAUGCCUC ........(((.....(((((....((((((((((....))).)))))))...))))).))).. (-11.12 = -12.12 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:54 2011