| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,473,295 – 13,473,357 |
| Length | 62 |
| Max. P | 0.823576 |
| Location | 13,473,295 – 13,473,357 |
|---|---|
| Length | 62 |
| Sequences | 7 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 67.75 |
| Shannon entropy | 0.63076 |
| G+C content | 0.53560 |
| Mean single sequence MFE | -14.17 |
| Consensus MFE | -10.19 |
| Energy contribution | -10.40 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.31 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13473295 62 + 27905053 UCUGCCAGUUUGAACUGCCGCCAGAUUUUGAAACGAGGUGGCAGCGCCGAAAC--CCUAUGCCU ........((((..((((((((..............))))))))...))))..--......... ( -14.54, z-score = -0.32, R) >droAna3.scaffold_13340 5766484 59 + 23697760 UCCAUCAAUCAAAAUACGCGCCUUUCUUUAAAACGAGGUGGCAGCACCCCCACCUGUCU----- ...................................((((((........))))))....----- ( -8.70, z-score = -0.72, R) >droEre2.scaffold_4770 9587305 64 - 17746568 UCUGUCAAUUUGAAUUGCCGCCAGAUUGUGGAACGAGGUGGCAGCACUGACACCCGCGAUUCCU ..(((((...((...(((((((...(((.....)))))))))).)).)))))............ ( -15.90, z-score = -0.12, R) >droYak2.chr3R 2041056 62 + 28832112 UCAGUCAAUUUAAAUUGCCGCCAGAUUGUAAAACGGGGUGGCAGCACCGAGUC--CCGAUUCCU ..............((((((((...((....))...))))))))....((((.--...)))).. ( -13.10, z-score = 0.09, R) >droSec1.super_12 1433982 62 - 2123299 UCUGCCAGUUUGAACUGCCGCCAGAUUUUGGAACGAGGUGGCAGCGCCGAAAC--GCUAUGCCU ...((...((((..((((((((..............))))))))...))))..--))....... ( -16.74, z-score = 0.03, R) >droSim1.chr3R 19511771 62 - 27517382 UCUGCCAGUUUGAACUGCCGCCAGAUUUUGGAACGAGGUGGCAGCGCCGAAAC--GCUAUGCCU ...((...((((..((((((((..............))))))))...))))..--))....... ( -16.74, z-score = 0.03, R) >droPer1.super_3 876721 51 - 7375914 -------GUUUGAAUUGGCGCCCAACUCUGGAACGGGGUGGCAACUCACUCUCUUCUC------ -------(..(((.(((.(((((............))))).))).)))..).......------ ( -13.50, z-score = -1.15, R) >consensus UCUGCCAGUUUGAAUUGCCGCCAGAUUUUGGAACGAGGUGGCAGCACCGAAAC__GCUAUGCCU ..............((((((((..............)))))))).................... (-10.19 = -10.40 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:54 2011