| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,459,732 – 13,459,824 |
| Length | 92 |
| Max. P | 0.977020 |
| Location | 13,459,732 – 13,459,824 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 67.77 |
| Shannon entropy | 0.54152 |
| G+C content | 0.35347 |
| Mean single sequence MFE | -23.09 |
| Consensus MFE | -15.72 |
| Energy contribution | -16.80 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.977020 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13459732 92 + 27905053 AAAGGUGUUUGAGCAGACGAGUUCAAAUAUUCUGUUUUGCAUACAAAGAGUACUUUUUUCCUGAAGUGACUGAGGUAUGUAGUAAUACCUUU------------------------ ((((((((((((((......))))))))........((((((((..((..((((((......)))))).))...))))))))....))))))------------------------ ( -24.90, z-score = -2.62, R) >droYak2.chr3R 2021863 116 + 28832112 AAAGGUGUUUGAGAAGACCAGUUCAAAUAUUUCGUUUUGCAUACAAAAAGUAUUUUUUCCCUGAAGUGUCUGAGGUAUGCAGUUAUAUCUUUCAAGGAAUCGCAGCUUUAUUUCAA ..(((((((((((........)))))))))))....((((((((....((((((((......)))))).))...)))))))).............(((((.........))))).. ( -20.00, z-score = 0.24, R) >droSec1.super_12 1421570 99 - 2123299 AAAGGUGUUUGAGCAGACGAGUUCAAAUAUUCUGCUUUGCAUACAAAGAGUACUUUUUCCCUGAAGUGACUGAGGUGUGCAGUAAUACCUUUUAAGCAC----------------- (((((((((.(((((((.............)))))))(((((((..((..((((((......)))))).))...)))))))..))))))))).......----------------- ( -28.62, z-score = -2.40, R) >droSim1.chr3R 19499267 99 - 27517382 AAAGGUGUUUGAGCAGACGAGUUCAAAUAUUCUGCUUUGCAUACAAAGAGUACUUUUUCCCUGAAGUGACUGAGGUGUGCAGUAAUACCUUUUAAGCAC----------------- (((((((((.(((((((.............)))))))(((((((..((..((((((......)))))).))...)))))))..))))))))).......----------------- ( -28.62, z-score = -2.40, R) >droVir3.scaffold_13047 2082505 88 - 19223366 UAAGCUUUUCGAGC---CAAAUUAGAAU-------UUCUCGUAAAAAUAGAUUUUAGCUCAUGAAGUUAA-GUGUCUCAUUUUGAUAUCUAUGGUUUAC----------------- ..........((((---((...((((..-------.((.....((((((((((((((((.....))))))-).)))).)))))))..))))))))))..----------------- ( -13.30, z-score = -0.07, R) >consensus AAAGGUGUUUGAGCAGACGAGUUCAAAUAUUCUGCUUUGCAUACAAAGAGUACUUUUUCCCUGAAGUGACUGAGGUAUGCAGUAAUACCUUUUAAGCAC_________________ ((((((((((((((......))))))))........((((((((......((((((......))))))......))))))))....))))))........................ (-15.72 = -16.80 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:51 2011