| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,424,178 – 13,424,270 |
| Length | 92 |
| Max. P | 0.989070 |
| Location | 13,424,178 – 13,424,270 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 88.22 |
| Shannon entropy | 0.19733 |
| G+C content | 0.55141 |
| Mean single sequence MFE | -35.66 |
| Consensus MFE | -30.08 |
| Energy contribution | -30.36 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.79 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.989070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13424178 92 - 27905053 GGCUUAUGAGCCGCCGACCGCAAAUGCACGCGCACACACGCAAUUGCAACUAUGCAAUUAUCAAAUUAGUGCGGGGCGUGGCGGGUCAAGCA .(((..(((.((((((..(((...((((((((......)))(((((((....))))))).........)))))..))))))))).)))))). ( -40.00, z-score = -3.28, R) >droSim1.chr3R 19463634 92 + 27517382 GGCUUAUGAGCCGUCGACCGCAAAUGCACACGCACACACGCAAUUGCAACUAUGCAAUUAUCAAAUUAGUGCGGGGCGUGGCGGGUCAAGCA .(((..(((.((((((..(((...(((((..((......))(((((((....))))))).........)))))..))))))))).)))))). ( -35.30, z-score = -2.77, R) >droSec1.super_12 1386151 92 + 2123299 GGCUUAUGAGCCGUCGACCGCAAAUGCACACGCACACACGCAAUUGCAACUAUGCAAUUAUCAAAUUAGUGCGGGGCGUGGCGGGUCAAGCA .(((..(((.((((((..(((...(((((..((......))(((((((....))))))).........)))))..))))))))).)))))). ( -35.30, z-score = -2.77, R) >droEre2.scaffold_4770 9538682 80 + 17746568 GGCUUAUGAGCCGCCAAGCGCUAGUGCGC----ACACACGCAGUUG--------CAAUUAUCAAAUUAGUGCGGGGCGUGGCGGGUCAAGCA .(((..(((.(((((..((((....))))----....((((..(((--------((.(((......)))))))).))))))))).)))))). ( -35.40, z-score = -2.77, R) >droYak2.chr3R 1978452 80 - 28832112 GGCUUAUGAGCCGCCGACCGCCAAUGCAC----ACACACGCAAUUG--------CAAUUAUCAAAUUAGUGCGGGGCGUGGCGGGUCAAGCA .(((..(((.((((((..((((..(((((----......((....)--------)((((....)))).))))).)))))))))).)))))). ( -32.30, z-score = -2.37, R) >consensus GGCUUAUGAGCCGCCGACCGCAAAUGCAC_CGCACACACGCAAUUGCAACUAUGCAAUUAUCAAAUUAGUGCGGGGCGUGGCGGGUCAAGCA .(((..(((.((((((..(((...(((((..((......))(((((((....))))))).........)))))..))))))))).)))))). (-30.08 = -30.36 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:39 2011