| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,382,035 – 13,382,126 |
| Length | 91 |
| Max. P | 0.995376 |
| Location | 13,382,035 – 13,382,126 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 74.27 |
| Shannon entropy | 0.48044 |
| G+C content | 0.43855 |
| Mean single sequence MFE | -15.59 |
| Consensus MFE | -12.79 |
| Energy contribution | -13.97 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.80 |
| SVM RNA-class probability | 0.995376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13382035 91 + 27905053 CUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAGACCUCCUUCUCAGCCACCCUCUCAUGUCAUCUCCUUU------ .(((((((((((((((....))))..))).)))))))).......(((.....)))...................................------ ( -15.20, z-score = -1.84, R) >droSim1.chr3R 19427205 91 - 27517382 CUAAAGUGGAGUCAACGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAGACUUCGUUAUCAGCCACCCUUUCCUGUCAUCUCCUUU------ .....((((....((((((....((((........))))......(((.....))))))))).....))))....................------ ( -14.90, z-score = -1.40, R) >droSec1.super_12 1351862 91 - 2123299 CUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAGACCUCCUUCUCAGCCACCCUCUCCUGUCAUCUCCUUU------ .(((((((((((((((....))))..))).)))))))).......(((.....)))...................................------ ( -15.20, z-score = -1.90, R) >droYak2.chr3R 1943540 69 + 28832112 CUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAGACCUCCUUCUCCUUU---------------------------- .(((((((((((((((....))))..))).)))))))).......(((.....))).............---------------------------- ( -15.20, z-score = -3.00, R) >droEre2.scaffold_4770 9504753 69 - 17746568 CUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAGACCUCCUUCUCUUUU---------------------------- .(((((((((((((((....))))..))).)))))))).......(((.....))).............---------------------------- ( -15.20, z-score = -2.87, R) >droAna3.scaffold_13340 5927577 97 - 23697760 CUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAGACCGCUGCUUCCCUCGCUUCCGUUUUUCGCCCUCCUCUUCUCC ..((((((((((((((....))))..))).)))))))((......(((.....)))((..((.......))...))......))............. ( -16.20, z-score = -1.40, R) >droWil1.scaffold_181130 12381722 73 + 16660200 CUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAGGUAACGUUUUCUGCUUAAC------------------------ .(((((((((((((((....))))..))).))))))))............(((((((........))))))).------------------------ ( -17.20, z-score = -2.29, R) >consensus CUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAGACCUCCUUCUCAGCCACCC_____U_UC__C__C_U_______ .(((((((((((((((....))))..))).)))))))).......(((.....)))......................................... (-12.79 = -13.97 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:36 2011