| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,333,516 – 13,333,611 |
| Length | 95 |
| Max. P | 0.572458 |
| Location | 13,333,516 – 13,333,611 |
|---|---|
| Length | 95 |
| Sequences | 9 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 73.17 |
| Shannon entropy | 0.51069 |
| G+C content | 0.37282 |
| Mean single sequence MFE | -20.20 |
| Consensus MFE | -9.55 |
| Energy contribution | -9.23 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572458 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13333516 95 - 27905053 ACUUAAGCUCUGUUGCAUGAAAUGCUUUUAAAUUUAAUUACAAAGCAUUUU-ACCCACACGACAC-UGGGGCGUAUACUUAAUAUCC---CUGCUAAGCA------------ .((((.((..(((((..((((((((((((((......))).))))))))))-)......))))).-.((((.((((.....))))))---))))))))..------------ ( -19.90, z-score = -1.87, R) >droPer1.super_0 8927543 112 + 11822988 ACUUAAGCUGCGCUGCAUAAAAUGCUUUUAAAUUUAAUUACAAAGCAUUUUCGCCAGUGAAUCGCACAGUGCGUAUACUCAAUAUCCACGCUGCUUAGCAAAAGACCAGAAG .(((..(((((((((...(((((((((((((......))).))))))))))...)))))....(((..(((.((((.....)))).)))..))).))))..)))........ ( -26.00, z-score = -1.55, R) >dp4.chr2 21711887 112 + 30794189 ACUUAAGCUGCGCUGCAUAAAAUGCUUUUAAAUUUAAUUACAAAGCAUUUUCGCCAGUGAGUCGCACGGUGCGUAUACUCAAUAUCCACGCUGCUUAGCAAAAGACCAGAGC ..((((((.((((((...(((((((((((((......))).))))))))))...)))((((((((.....)))...))))).......))).)))))).............. ( -27.40, z-score = -0.80, R) >droAna3.scaffold_13340 5884792 86 + 23697760 ACUUAAGCUCUGCAGCAUGAAAUGCUUUUAAAUUUAAUUACAAAGCAUUUU-CCCCGAAUGAAUC-UCAAGCAUAUAAACAGAAACCU------------------------ ........((((......(((((((((((((......))).))))))))))-....(..((....-.))..).......)))).....------------------------ ( -10.80, z-score = -0.56, R) >droEre2.scaffold_4770 9461782 95 + 17746568 ACUUAAGCUCUGCUGCAUGAAAUGCUUUUAAAUUUAAUUACAAAGCAUUUU-ACCCACACGGCAC-UGGGGCGUAUACUUAAUAUCC---CUGCUAAGCA------------ .((((.(((.((.((..((((((((((((((......))).))))))))))-)..)))).)))..-.((((.((((.....))))))---))..))))..------------ ( -22.00, z-score = -1.58, R) >droYak2.chr3R 1891243 95 - 28832112 ACUUAAGCUCUAUUGCAAGAAAUGCUUUUAAAUUUAAUUACAAAGCAUUUU-ACCCACACGGCAC-UGGGGCGUAUAUUUAAUAUCC---CUGCUAAGCA------------ ......(((.........(((((((((((((......))).))))))))))-........((((.-.(((..((.......))..))---))))).))).------------ ( -19.00, z-score = -0.91, R) >droSec1.super_12 1311111 95 + 2123299 ACUUAAGCUCUGUUGCAUGAAAUGCUUUUAAAUUUAAUUACAAAGCAUUUU-ACCCACACGACAC-UGGGGCGUAUACUUAAUAUCC---CUGCUAAGCA------------ .((((.((..(((((..((((((((((((((......))).))))))))))-)......))))).-.((((.((((.....))))))---))))))))..------------ ( -19.90, z-score = -1.87, R) >droSim1.chr3R 19384383 95 + 27517382 ACUUAAGCUCUGUUGCAUGAAAUGCUUUUAAAUUUAAUUACAAAGCAUUUU-ACCCACACGGCAC-UAGGGCGUAUACUUAAUAUCC---CUGCUAAGCA------------ .((((.(((.(((.(..((((((((((((((......))).))))))))))-)..)))).)))..-(((((.((((.....))))))---))).))))..------------ ( -22.70, z-score = -2.41, R) >droWil1.scaffold_181089 1924663 85 - 12369635 ACUUUAGCUGCUUGGCACAAAAUGCUUUUAAAUUUAAUUACAAGGCAUUUUCCUGCACACAUA---CGAGACUAACAUCCUUCAAGUG------------------------ .........((((((((.(((((((((((((......))).))))))))))..))).......---.((........))...))))).------------------------ ( -14.10, z-score = -1.20, R) >consensus ACUUAAGCUCUGUUGCAUGAAAUGCUUUUAAAUUUAAUUACAAAGCAUUUU_ACCCACACGACAC_UGGGGCGUAUACUUAAUAUCC___CUGCUAAGCA____________ ......((......))..(((((((((((((......))).))))))))))............................................................. ( -9.55 = -9.23 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:32 2011