| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,284,257 – 13,284,347 |
| Length | 90 |
| Max. P | 0.617109 |
| Location | 13,284,257 – 13,284,347 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 81.94 |
| Shannon entropy | 0.35583 |
| G+C content | 0.33021 |
| Mean single sequence MFE | -13.68 |
| Consensus MFE | -9.72 |
| Energy contribution | -9.64 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617109 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 13284257 90 - 27905053 ----------------GCUCACUCAAACCCCAGCGUGCAUAUUUUAUGACUUUUAUCAUAAUUUAUGCGUUGAUACAGCAAAUGCAUAAAAUUAAAUUCAAUUCAC------ ----------------................(((((((((..((((((......))))))..)))))((((...))))..)))).....................------ ( -17.00, z-score = -2.87, R) >droSim1.chr3R 19334170 90 + 27517382 ----------------GCUCACUCAAACCCCAGCGUGCAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACAGCAAAUGCAUAAAAUUAAAUUCAAUUCAC------ ----------------................(((((((((..(((((........)))))..)))))((((...))))..)))).....................------ ( -14.80, z-score = -1.79, R) >droSec1.super_12 1261657 90 + 2123299 ----------------GCUCACUCAAACCCCAGCGCGCAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACAGCAAAUGCAUAAAAUUAAAUUCAAUUCAC------ ----------------(((...(((.........(((((((..(((((........)))))..))))))))))...)))...........................------ ( -15.00, z-score = -1.82, R) >droEre2.scaffold_4770 9407906 90 + 17746568 ----------------GCUCACUCGAACCCCAGCGUGCAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACAGCAAAUGCAUAAAAUUAAAUUCAAUUCAC------ ----------------................(((((((((..(((((........)))))..)))))((((...))))..)))).....................------ ( -14.80, z-score = -1.50, R) >droYak2.chr3R 1832260 90 - 28832112 ----------------GUUCACUCAAACCCCAGCGCGCAUAUUUUAUGCCUUAUAUCAUAAUUUAUGCGUUGAUACGGCAAAUGCAUAAAAUUAAAUUCAAUUCAC------ ----------------..................(((((((..(((((........)))))..))))))).......((....)).....................------ ( -13.70, z-score = -0.93, R) >droAna3.scaffold_13340 5839400 89 + 23697760 ----------------ACUCACUC-UCCGCCGGCAUACAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACAGCAAAUGCAUAAAAUUAAAUUCAAUUCAC------ ----------------........-......((((((.......))))))...........((((((((((.........))))))))))................------ ( -16.00, z-score = -2.96, R) >dp4.chr2 21659723 89 + 30794189 ----------------GCUCACUC-UCCCGCACUGUACAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACUGCAAAUGCAUAAAAUUAAAUUCAAUUCGA------ ----------------........-...((...((.....(((((((((.((((((((............)))))....))).)))))))))......))...)).------ ( -9.90, z-score = -0.25, R) >droPer1.super_0 8882597 89 + 11822988 ----------------GCUCACUC-UCCACCACUAUACAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACUGCAAAUGCAUAAAAUUAAAUUCAAUUCGA------ ----------------........-..................(((((........)))))((((((((((.........))))))))))................------ ( -9.60, z-score = -1.13, R) >droWil1.scaffold_181089 1881919 104 - 12369635 --------UGCUCCUACUCCAGCAGCUCGGUAGCAUGCAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUAUAGCAAAUGCAUAAAAUUAAAUUCAAUUCAGAAACAC --------((((........))))..(((((((...(((((...)))))...)))))....((((((((((.........))))))))))...............))..... ( -17.30, z-score = -0.19, R) >droVir3.scaffold_13047 14391261 92 - 19223366 --------------CUCUACCCUCUACCCAGAACAUGUAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACUGCAAAUGCAUGAAAUUAAAUUCAAUUCAU------ --------------................(((.(((((((..(((((........)))))..)))))))......(((....)))((((......)))).)))..------ ( -11.60, z-score = -1.21, R) >droMoj3.scaffold_6540 17811499 105 - 34148556 UCCUGCGCUCCCCCCACUUCCCUCGGCCUA-CACAUGCAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUCAUACUGCAAAUGCAUAAAAUUAAAUUCAAUUCAU------ ...((((((...............)))...-...(((((((..(((((........)))))..))))))).......)))..........................------ ( -13.06, z-score = -1.38, R) >droGri2.scaffold_14830 683860 91 + 6267026 -------------CUGCCACA--AACCCUGCAACAUGUAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACUGCAAAUGCAUAAAAUUAAAUUCAAUUCAU------ -------------.(((....--.......((((..(((((..(((((........)))))..)))))))))...........)))....................------ ( -11.45, z-score = 0.12, R) >consensus ________________GCUCACUCAACCCCCAGCAUGCAUAUUUUAUGCCUUUUAUCAUAAUUUAUGCGUUGAUACAGCAAAUGCAUAAAAUUAAAUUCAAUUCAC______ ...........................................(((((........)))))((((((((((.........))))))))))...................... ( -9.72 = -9.64 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:30 2011