| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,749,821 – 7,749,916 |
| Length | 95 |
| Max. P | 0.835275 |
| Location | 7,749,821 – 7,749,916 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 90.55 |
| Shannon entropy | 0.16490 |
| G+C content | 0.51039 |
| Mean single sequence MFE | -36.88 |
| Consensus MFE | -21.67 |
| Energy contribution | -22.87 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.97 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7749821 95 + 23011544 UCUGAACGAGUGUGU------GCAACAAGUUUGUUUGCCGCU------CAUGCAACCCGCCAGAUACUUGUCGCUCACUCGA---CUGCGAGUAUUU-GGCUACAGGUUGC- .......(((((.((------(.((((....)))))))))))------)..((((((.(((((((((((((.(.((....))---).))))))))))-)))....))))))- ( -36.30, z-score = -3.10, R) >droAna3.scaffold_12916 6574894 105 + 16180835 UCUGAACGAGUGUGU------GCAACAAGUUUGUUUGCCGCUGCCGUUCAUGCAACACGAGAGUUACUUGUCGCUCACUCGCAACCGGCGAAUAUUUUGGCCACAGGUUGU- .......(((((...------((.((((((...((((..(.(((.......))).).))))....)))))).)).)))))(((((((((.((....)).)))...))))))- ( -31.60, z-score = -0.24, R) >droEre2.scaffold_4929 16671177 101 + 26641161 UCUGAACGAGUGUGUUUGCUUGCAACAAGUUUGUUUGCCGCU------CAUGCAACCCGCCAGAUACUUGUCGCUCACUCGA---CUGCGAGUAUUU-GGCUACAGGUUGC- .......(((((.((..((..((.....))..))..))))))------)..((((((.(((((((((((((.(.((....))---).))))))))))-)))....))))))- ( -38.70, z-score = -3.41, R) >droYak2.chr2L 17172038 95 - 22324452 UCUGAACGAGUGUGU------GCAACAAGUUUGUUUGCCGCU------CAUGCAACCCGCCAGAUACUUGUCGCUCACUCGA---CUGCGAGUAUUU-GGCUACAGGUUGC- .......(((((.((------(.((((....)))))))))))------)..((((((.(((((((((((((.(.((....))---).))))))))))-)))....))))))- ( -36.30, z-score = -3.10, R) >droSec1.super_3 3258913 94 + 7220098 UCUGAACGAGUGU--------GCAACAAGUUUGUUUGCCGCU------CAUGCAACCCGCCAGAUACUUGUCGCUCACUCGA---CUGCGAGUAUUU-GGCUACAGGUUGCA .......(((((.--------((((((....)).))))))))------).(((((((.(((((((((((((.(.((....))---).))))))))))-)))....))))))) ( -40.20, z-score = -4.49, R) >droSim1.chr2L 7542533 96 + 22036055 UCUGAACGAGUGUGU------GCAACAAGUUUGUUUGCCGCU------CAUGCAACCCGCCAGAUACUUGUCGCUCACUCGA---CUGCGAGUAUUU-GGCUACAGGUUGCA .......(((((.((------(.((((....)))))))))))------).(((((((.(((((((((((((.(.((....))---).))))))))))-)))....))))))) ( -38.20, z-score = -3.47, R) >consensus UCUGAACGAGUGUGU______GCAACAAGUUUGUUUGCCGCU______CAUGCAACCCGCCAGAUACUUGUCGCUCACUCGA___CUGCGAGUAUUU_GGCUACAGGUUGC_ ...(((((((..(((.........)))..)))))))...............((((((.(((((((((((((.(.((....))...).)))))))))).)))....)))))). (-21.67 = -22.87 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:20 2011