| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,266,641 – 13,266,793 |
| Length | 152 |
| Max. P | 0.833373 |
| Location | 13,266,641 – 13,266,793 |
|---|---|
| Length | 152 |
| Sequences | 8 |
| Columns | 156 |
| Reading direction | forward |
| Mean pairwise identity | 68.74 |
| Shannon entropy | 0.62429 |
| G+C content | 0.44337 |
| Mean single sequence MFE | -33.53 |
| Consensus MFE | -17.01 |
| Energy contribution | -16.62 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.833373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13266641 152 + 27905053 -UUUACUUGCAGAAACCCGUACAACAAUGGACCGGGCACUUGCAUCACCUACGAUGCCAUCAAUGCGGCCUACUUGGAUGCACGCAAGCGUAUUCGUGAGUUAAUCCUCAAUUC---AAUACAGUAAAGCCUUCCUUAACGGAAUCAAGUUUAAAA -...(((((.......((((......)))).(((.(((...(((((......)))))......)))(((.((((.((((((.(....).)))))).((((......))))....---.....))))..)))........)))...)))))...... ( -35.60, z-score = -0.94, R) >droGri2.scaffold_14830 668027 117 - 6267026 UUUCUUUCGCAGUAAUCCAUACAACAGCGGUGCUGGCACUUGUAUCACCUAUGAUGCCAUCAAUGCGGCCUAUUCGGAUGCACGCAAGCGUAUACGUAAGU--GUUUUUUAUAC---AAUGC---------------------------------- .......(((.(((.....)))....(((.((.(((((.(..((.....))..)))))).)).((((.((.....)).)))))))..))).((((....))--)).........---.....---------------------------------- ( -25.20, z-score = 0.96, R) >droAna3.scaffold_13340 5822326 128 - 23697760 -UUUAUUUGCAGAGGUCCAUACAACAAUGGUCCGGGGACGUGCAUCACCUACGAUGCUAUCAACGCCGCCUAUUUGGAUGCACGCAAGCGUAUUCGUAAGUUAAUCAUAAUUUUUCUGUUACUGUGAAG--------------------------- -(((((..(((((((.((((......)))).))((((.((((((((......))))).....))))).)).....((((((.(....).))))))...................)))))....))))).--------------------------- ( -35.50, z-score = -1.67, R) >droSim1.chr3R 19313427 151 - 27517382 -UUUACUUGCAGAAACCCGUACAACAAUGGACCGGGCACUUGCAUCACCUACGAUGCCAUCAAUGCGGCCUACUUGGAUGCACGCAAGCGUAUUCGUGAGUUAAUCCUAAAUUC---AUUACAGUAAAGCCUCCCUUAAGAGAAUCAAGCUUAAA- -....((((((....((((..((....))...)))).....(((((......)))))......)))(((.((((.((((((.(....).))))))(((((((.......)))))---))...))))..)))........))).............- ( -33.90, z-score = -0.64, R) >droSec1.super_12 1244340 152 - 2123299 -UUUACUUGCAGAAACCCGUACAACAAUGGACCGGGCACUUGCAUCACCUACGAUGCCAUCAAUGCGGCCUACUUGGAUGCACGCAAGCGUAUUCGUGAGUUAAUCCUAAAUUC---AAUACAGUAGAGCCUCCUUUCAGAGAAUCAAGUUUAAAA -....((((((....((((..((....))...)))).....(((((......)))))......)))((((((((.((((((.(....).)))))).((((((.......)))))---)....))))).)))........))).............. ( -37.80, z-score = -1.52, R) >droYak2.chr3R 1814933 147 + 28832112 -UUUACUUGCAGAAACCCGUACCACAAUGGACCGGGCACUUGCAUCACCUAUGAUGCCAUCAACGCGGCCUACUUGGAUGCACGCAAGCGUAUACGUGAGUGAAUCCUAAAUUC---AAUACAGUA----CUUUCUUAGGAGAA-CAAAUUUAAAA -((((((..(...........(((....((.(((.(.....((((((....))))))......).)))))....)))((((.(....).))))..)..))))))((((((....---.........----.....))))))...-........... ( -35.57, z-score = -1.43, R) >droEre2.scaffold_4770 9389974 142 - 17746568 -UUCACUUGCAGAAACCCGUACAACAAUGGACCGGGCACUUGCAUCACCUACGAUGCCAUCAAUGCGGCCUACUUGGAUGCACGCAAGCGCAUACGUGAGUAAAGCCUCAAUUC---AAUACAGUA----CUUACUAAAUAUAAUAUAAA------ -...(((.(((....((((..((....))...)))).....(((((......)))))......)))(((.((((((.((((.(....).))))...))))))..))).......---.....))).----....................------ ( -30.00, z-score = -0.43, R) >apiMel3.GroupUn 303135129 124 - 399230636 -----UUUUCAGCCCACCG-ACAGC--CGGAUCACAGACAUGCAUCACUUACGAUGCCGUGAAUCGAGCGUAUAUCGAAGCGAGAAAACGCAUCAGUGAGU--AUUGCAAAUAGGGAAAGGAAUAGGAGGAAAA---------------------- -----..(((..(((.(((-.....--)))..........((((..(((((((((((.((...(((..((.....))...)))....))))))).))))))--..))))....)))....)))...........---------------------- ( -34.70, z-score = -2.58, R) >consensus _UUUACUUGCAGAAACCCGUACAACAAUGGACCGGGCACUUGCAUCACCUACGAUGCCAUCAAUGCGGCCUACUUGGAUGCACGCAAGCGUAUUCGUGAGUUAAUCCUAAAUUC___AAUACAGUA_AG_CUUCCUUAA_AGAA_CAA________ .....(((((......((((......))))...........(((((......))))).......(((.((.....)).)))..))))).................................................................... (-17.01 = -16.62 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:29 2011