| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,253,362 – 13,253,460 |
| Length | 98 |
| Max. P | 0.517729 |
| Location | 13,253,362 – 13,253,460 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.82 |
| Shannon entropy | 0.42261 |
| G+C content | 0.51496 |
| Mean single sequence MFE | -31.02 |
| Consensus MFE | -18.55 |
| Energy contribution | -18.17 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517729 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13253362 98 + 27905053 AUAAAAAUCCGGCUGGGUGGAACUUAGCGAACGCCUGCUAAUUGUCCGUUGUUUGCUGGGUCGCCUCGUUCGCUGAUUUGUUUUUCCGAGUCCCCCCA--------------- ..........((((.((..(((((((((((((((((((.(((........))).)).)))......))))))))))...))))..)).))))......--------------- ( -28.60, z-score = -1.20, R) >droSim1.chr3R 19300045 98 - 27517382 AUAAAAAUCCGGCUGGGUGGAACUUAGCGAGCGCCUGCUAAUUGUCCGUUGUUUGCUGGGUCGCCUCGUUCGCUGAUUUGUUUUUCCGAGUCCCCCCA--------------- ..........((((.((..(((((((((((((((((((.(((........))).)).)))......))))))))))...))))..)).))))......--------------- ( -28.60, z-score = -0.82, R) >droSec1.super_12 1230974 98 - 2123299 AUAAAAAUCCGGCUGGGUGGAACUUAGCGAGCGCCUGCUAAUUGUCCGUUGUUUGCUGGGUCGCCUCGUUCGCUGAUUUGUUUUUCCGAGUCCCCCCA--------------- ..........((((.((..(((((((((((((((((((.(((........))).)).)))......))))))))))...))))..)).))))......--------------- ( -28.60, z-score = -0.82, R) >droYak2.chr3R 1800947 95 + 28832112 AUAAAA-UCCGGCUGGGUGGAACUUAGCGAGUGCCUGCUAAUUGUCCGUUGUGUGCUGGGUCGCCUCGUUCGCUGAUUUGUUUUUCCGAGUCCCCA----------------- ......-...((((.((..(((((((((((((((((((................)).))).))).....)))))))...))))..)).))))....----------------- ( -25.09, z-score = -0.05, R) >droEre2.scaffold_4770 9375053 96 - 17746568 AUAAAAAUCUGGCUGGGUGAAACUUAGCGAGUGCCUGCUAAUUGUCCGUUGUUUGCUGGGUCGCCUCGUUCGCUGAUUUGUUUUUCCGAGUCCCCA----------------- ..........((((.((.((((((((((((((((((((.(((........))).)).))).))).....)))))))...))))).)).))))....----------------- ( -26.10, z-score = -1.25, R) >droAna3.scaffold_13340 5809301 113 - 23697760 CUGGCUAGAUGGCUGGGUGGAACUUAGCGAGUGCCUGCUAAUUGUCCGUCGUUUGUUGGGUCGCCUCGUUCGCUGAUUUGUUUUUCCAAAUAUCUUGCGACUGCAGUCGGCCA ..(((.(((((((.(((..(...((((((......)))))))..))))))))))))).(((((.((((.((((..(((((......))))).....)))).)).)).))))). ( -33.90, z-score = -0.17, R) >dp4.chr2 21627950 108 - 30794189 -AUAAAACCCGGCUUGCCGGGAAUUAGCGAGUAGCUGCUAAUUGACUGUGCUCUGUUGGGUCGCCUCGUUCGUUGAUUUGUUUUUUCGAAUCUCGACUACAGGCCACCA---- -.....(((((((..(((((.((((((((......))))))))..))).))...))))))).((((.(((((..((((((......)))))).)))..)))))).....---- ( -36.60, z-score = -2.58, R) >droPer1.super_0 8850844 108 - 11822988 -AUAAAACCCGGCUUGCCGGGAAUUAGCGAGUAGCUGCUAAUUGACUGUGCUCUGCUGGGUCGCCUCGUUCGUUGAUUUGUUUUUUCGAAUCUCGACUGCAGGCCACCA---- -.....(((((((..(((((.((((((((......))))))))..))).))...))))))).((((((.(((..((((((......)))))).))).)).)))).....---- ( -40.70, z-score = -3.31, R) >consensus AUAAAAAUCCGGCUGGGUGGAACUUAGCGAGUGCCUGCUAAUUGUCCGUUGUUUGCUGGGUCGCCUCGUUCGCUGAUUUGUUUUUCCGAGUCCCCACA_______________ ......(((((((....((((..((((((......))))))...))))......))))))).............((((((......))))))..................... (-18.55 = -18.17 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:23 2011