| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,249,670 – 13,249,763 |
| Length | 93 |
| Max. P | 0.846035 |
| Location | 13,249,670 – 13,249,763 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 82.16 |
| Shannon entropy | 0.37822 |
| G+C content | 0.32551 |
| Mean single sequence MFE | -20.96 |
| Consensus MFE | -13.89 |
| Energy contribution | -13.96 |
| Covariance contribution | 0.07 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.846035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13249670 93 - 27905053 --UUUUCGUGGCUUUUUGC---UAUUUAAACAUGCUAGU-AAUUUUUAAUGGCGUGUGACAUUUUUGUUUACGCACAGUCUCA--AUGUAGAGCAAAACAU --.....(((((.....))---))).......((((...-.(((.....(((((((.((((....))))))))).)).....)--))....))))...... ( -18.50, z-score = -0.37, R) >droSim1.chr3R 19296335 94 + 27517382 -UUUUUCGUGGCUUUUUGC---UAUUUAAACAUGCUAUU-AAUUUUUAAUGGCGUGUGACAUUUUUGUUUACGCACAGCCUCA--AUGUAGAGCAAAACAU -......(.((((...(((---.......((((((((((-(.....)))))))))))((((....))))...))).)))).).--((((........)))) ( -22.50, z-score = -1.97, R) >droSec1.super_12 1227199 93 + 2123299 -UUUUUCGUGGCUUUUUGC---UAUUUAAACAUGCUAUUAAAUUUUUAAUGGCGUGUGACAUUUUUGUUUACGCACAG-CUCA--AUGUAGAGC-AAACAU -......(((((.....))---)))....((((((((((((....))))))))))))((((....))))........(-(((.--.....))))-...... ( -24.00, z-score = -2.56, R) >droYak2.chr3R 1794678 95 - 28832112 UUUUUACCUGGCUUUUUGC---UAUUUAAACAUGCUAUU-AAUUUUUAAUGGCGUGUGACAUUUUUGUUUACGCACAGCCUCA--AUGUAGAGCAAAACAU .((((((..((((...(((---.......((((((((((-(.....)))))))))))((((....))))...))).))))...--..))))))........ ( -23.30, z-score = -2.57, R) >droEre2.scaffold_4770 9371506 95 + 17746568 UUUUUAACUGGCUGUUUGC---UAUUUAAACAUGCUAUU-AAUUUUUAAUGGCGUGUGACAUUUUUGUUUACGCACAGCCUCA--AUGUAGAGCAAAACAU .........((((((..((---.......((((((((((-(.....)))))))))))((((....))))...))))))))...--((((........)))) ( -24.40, z-score = -2.43, R) >droAna3.scaffold_13340 5804841 97 + 23697760 -UUGUUGUUGCGUUUUUGCGCUUUUUUAAACAUGCUAUU-CAUUUUUAAUGGCGUGUGACAUUUUUGUUUACGCAUAGCCUCA--AUGUAGAGCAAAACAU -....((((((((....))))........((((((((((-.......)))))))))))))).((((((((..((((.......--)))).))))))))... ( -22.60, z-score = -1.02, R) >dp4.chr2 21623945 94 + 30794189 -GUUUCUUCGGUUUGUU-----UUUUUAAACAUGCUAUU-AAUUUUUAAUGGCGUGUGACAUUUUUGUUUACGCAUAGCCCCGAUAUGUAGAGCAAAACAU -(((.(....)......-----.......((((((((((-(.....))))))))))))))..((((((((..(((((.......))))).))))))))... ( -20.30, z-score = -1.72, R) >droPer1.super_0 8846867 94 + 11822988 -GUUUCUUCGGUUUGUU-----UUUUUAAACAUGCUAUU-AAUUUUUAAUGGCGUGUGACAUUUUUGUUUACGCAUAGCCCCGAUAUGUAGAGCAAAACAU -(((.(....)......-----.......((((((((((-(.....))))))))))))))..((((((((..(((((.......))))).))))))))... ( -20.30, z-score = -1.72, R) >droVir3.scaffold_13047 14353075 87 - 19223366 -----------UUACUUUAAGUUUAUUAAACAUGCCAUU-AAAUUUUAAUGGCGUGUGACAUUUUUGUUUACGCACCGCCUAA--AUGUAGAGCAAAACAU -----------...(((((.(((((....((((((((((-(.....)))))))))))((((....))))...........)))--)).)))))........ ( -19.90, z-score = -2.51, R) >droMoj3.scaffold_6540 17776762 87 - 34148556 -----------UUUCUUAAAGUUUAUUAAACAUGCCAUU-AGAUUUUAAUGGCGUGUGACAUUUUUGUUUACGCACAGCUUCA--AUGUAGAGCAAAACAU -----------.........((((.....((((((((((-((...))))))))))))((((....))))........((((..--.....)))).)))).. ( -19.40, z-score = -2.10, R) >droGri2.scaffold_14830 651406 87 + 6267026 -----------UUGUGUCUAGUUUAUUAAACAUGCCAUU-AAAUUUUAAUGUCGUGUGACAUUUUUGUUUACGCACAGCGUCA--AUGUAGAGCAAAACAU -----------..(((((...........(((((.((((-(.....))))).))))))))))((((((((((((...))))..--.....))))))))... ( -15.31, z-score = 0.08, R) >consensus _UUUUUC_UGGCUUUUUGC___UUUUUAAACAUGCUAUU_AAUUUUUAAUGGCGUGUGACAUUUUUGUUUACGCACAGCCUCA__AUGUAGAGCAAAACAU .............................((((((((((........)))))))))).....((((((((..(((...........))).))))))))... (-13.89 = -13.96 + 0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:22 2011