| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,249,354 – 13,249,444 |
| Length | 90 |
| Max. P | 0.733390 |
| Location | 13,249,354 – 13,249,444 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.39 |
| Shannon entropy | 0.29704 |
| G+C content | 0.48306 |
| Mean single sequence MFE | -29.17 |
| Consensus MFE | -18.67 |
| Energy contribution | -19.03 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.733390 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13249354 90 - 27905053 -----GGCCGAUCCAAUACGGCACAUAAAAUCCAAUUUAAUUAAGUUGGACUCUCGGAUUG----AGACGCAGUCGGA--GGAUCGAGACUCAGAUGGAGG------------------- -----...((((((....((((........((((((((....)))))))).((((.....)----)))....))))..--))))))...(((.....))).------------------- ( -26.20, z-score = -1.91, R) >droSim1.chr3R 19296019 90 + 27517382 -----GGCCGAUCCAAUCCGGCACAUAAAAUCCAAUUUAAUUAAGUUGGACUCUCGGAUUG----AGACGCAGUCGGA--GGAUCGAGACUCAGAUGGAGG------------------- -----...((((((..((((((........((((((((....)))))))).((((.....)----)))....))))))--))))))...(((.....))).------------------- ( -30.50, z-score = -2.66, R) >droSec1.super_12 1226893 90 + 2123299 -----GGCCGAUCCAAUCCGGCACAUAAAAUCCAAUUUAAUUAAGUUGGACUCUCGGAUUG----AGACGCAGGCGGA--GGAUCGAGACUCAGAUGGAGG------------------- -----...((((((..((((.(........((((((((....)))))))).((((.....)----)))....).))))--))))))...(((.....))).------------------- ( -28.60, z-score = -2.05, R) >droYak2.chr3R 1794366 90 - 28832112 -----GGCCGAUCCAAUCCGGCACAUAAAAUCCAAUUUAAUUAAGUUGGACUCUCGGAUUG----AGACGCAGUCGGA--GGAUCGAGACUCAGAUGGAGG------------------- -----...((((((..((((((........((((((((....)))))))).((((.....)----)))....))))))--))))))...(((.....))).------------------- ( -30.50, z-score = -2.66, R) >droEre2.scaffold_4770 9371190 90 + 17746568 -----GGUCGAUCCAAUCCGGCACAUAAAAUCCAAUUUAAUUAAGUUGGACUCUCGGAUUG----AGACGCAGUCGGA--GGAUCGAGACUCAGAUGGAGG------------------- -----..(((((((..((((((........((((((((....)))))))).((((.....)----)))....))))))--)))))))..(((.....))).------------------- ( -32.00, z-score = -3.18, R) >droAna3.scaffold_13340 5804495 115 + 23697760 -----GGCCAAUCCAAUCCAGCACAUAAAAUCCAAUUUAAUUAAGUUAGACUCUCGGAUCGGAUCAGAUCGGACUGGAUCGGAUUGAGACGCAGACGGAGGAUCGAGUCUGAUUUUGAGA -----...((((((.((((((.........((.(((((....))))).))...((.((((......)))).)))))))).)))))).....(((((..........)))))......... ( -30.10, z-score = -0.26, R) >dp4.chr2 21623596 95 + 30794189 GGUCGAUCCGAUCCAGUCCGGCACAUAAAACCCAAUUUAAUUAAGUUGGACUCUCGGAUUG----AGACGGAGUUUGA--GGAUCGAGACUAAGACCCACG------------------- ((((..(((((((((.((((...........(((((((....)))))))..((((.....)----))))))).)....--)))))).))....))))....------------------- ( -29.20, z-score = -1.98, R) >droPer1.super_0 8846518 95 + 11822988 GGCCGAUCCGAUCCAGUCCGGCACAUAAAACCCAAUUUAAUUAAGUUGGACUCUCGGAUUG----AGACGGAGUUUGA--GGAUCGAGACUAAGACCCACG------------------- ...((((((((...((((((((......................)))))))).))))))))----....((.((((.(--(........)).))))))...------------------- ( -26.25, z-score = -1.32, R) >consensus _____GGCCGAUCCAAUCCGGCACAUAAAAUCCAAUUUAAUUAAGUUGGACUCUCGGAUUG____AGACGCAGUCGGA__GGAUCGAGACUCAGAUGGAGG___________________ ........((((((..((((((........((((((((....))))))))....((..(......)..))..))))))..)))))).................................. (-18.67 = -19.03 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:21 2011