| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,211,553 – 13,211,638 |
| Length | 85 |
| Max. P | 0.782436 |
| Location | 13,211,553 – 13,211,638 |
|---|---|
| Length | 85 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 61.65 |
| Shannon entropy | 0.64026 |
| G+C content | 0.46930 |
| Mean single sequence MFE | -24.26 |
| Consensus MFE | -9.47 |
| Energy contribution | -8.51 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.782436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13211553 85 - 27905053 AGCAGUGUUGUAUUCGAAUCAGCUGAGUAUAACGAAUGGGAAAUGUGU--UGAAAAGGUUUAAGUCGUGGC-------CUUUCGCCAGCUGGUC------ ..((((((((((((((.......))))))))))(((.(((..(((..(--((((....)))))..)))..)-------)))))....))))...------ ( -21.00, z-score = -0.95, R) >droYak2.chr3R 17303290 74 - 28832112 ACCAGUGUUGUAUUCGGAUCAGCUGUGUGUAAUGGCUG-------------GAAAGGUGGUAAUUCAUGGC-------CUUUUGCCAGCUGGUC------ ((((((...((........(((((((.....)))))))-------------(((((((.((.....)).))-------)))))))..)))))).------ ( -24.30, z-score = -1.93, R) >droSec1.super_12 1186338 85 + 2123299 AGCAGUGUUGUAUUCGGAUCAGCUGAGUAUAACGGUUGGGUAAGGUGC--UGAAAAGGUUUAAUUCGUGGC-------CUUUUGCCAGCUGGUC------ ..(((((((((((((((.....))))))))))).....(((((((.((--((....((......)).))))-------.))))))).))))...------ ( -26.20, z-score = -2.05, R) >droSim1.chr3R 19256416 85 + 27517382 AGCAGUGUUGUAUUCGGAUCAGCUGAGUAUAACGGUUGGGUAAUGUGC--UGAGAAGGUUUGAUUCGUGGG-------CUUUUGCCAGCUGGUC------ ..(((((((((((((((.....))))))))))).....(((((...((--(.((((.......))).).))-------)..))))).))))...------ ( -26.70, z-score = -2.14, R) >droMoj3.scaffold_6540 17738265 100 - 34148556 GGCAGAUUAAAACGCAAAUCGAUAGACAGUGGCGGUAAGACGAUAUGCGAUCCACAAACAACAUCCACGACAGCGAUGCAUUUGUCUGUUGCCAAGUGAU (((.((((........))))((((((((((((..(((........)))...))))......(((((......).))))....)))))))))))....... ( -23.10, z-score = -0.33, R) >consensus AGCAGUGUUGUAUUCGGAUCAGCUGAGUAUAACGGUUGGGUAAUGUGC__UGAAAAGGUUUAAUUCGUGGC_______CUUUUGCCAGCUGGUC______ ................((((((((.......((((.............................))))(((............)))))))))))...... ( -9.47 = -8.51 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:16 2011