| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,209,207 – 13,209,314 |
| Length | 107 |
| Max. P | 0.935389 |
| Location | 13,209,207 – 13,209,314 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 70.90 |
| Shannon entropy | 0.52966 |
| G+C content | 0.35085 |
| Mean single sequence MFE | -24.33 |
| Consensus MFE | -12.00 |
| Energy contribution | -13.22 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.935389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13209207 107 - 27905053 UAGUAUAACUCUAUUGGUUUGGACAUUCUUCGGCUUUCGUGUUGAUGACAAUCUUUUAAAUGACAGUAGCAUAUUUGUGUUGCAUAACAGGUAUCGCAACAAUGGAG---- ........(((((((((((((((...((.(((((......))))).))......))))))).......((((((((((........)))))))).))..))))))))---- ( -24.00, z-score = -0.91, R) >droSim1.chr3R 19254183 107 + 27517382 UAGUAUAACUCUAUUAGUUUGGACAUUCUUCGGUUUUCGUGUUGAUGCCAAUCAUUUAAAUGACAGUAGCAUAUUUGUGUUGCAUAACAGGUAUCGAAACAAUGGAG---- ........(((((((.((((.(((((.(....).....)))))((((((..((((....))))..(((((((....)))))))......)))))).)))))))))))---- ( -28.00, z-score = -2.59, R) >droSec1.super_12 1184040 107 + 2123299 UAGUAUAACUCUAUUAGUUGGGACAUUCUUCGGUUUUCGUGUUGAUGCCAAUCAUUUAAAUGACAGUAGCAUAUUUGUGUUGCAUAACAGGUAUCGAAACAAUGGAG---- ........(((((((....(..(....(....).)..)((.((((((((..((((....))))..(((((((....)))))))......)))))))).)))))))))---- ( -27.40, z-score = -2.24, R) >droYak2.chr3R 17300930 85 - 28832112 UAGUAUAACUCUAUUAGUUUG----------------------GAUGCUUAUCAUUUAAAUGGCGGUAGCAUAUUUGUGUUGCAUAACAGGUAUCGAAACAAUGGAA---- .........((((((.((((.----------------------(((((((.((((....))))..(((((((....))))))).....))))))).)))))))))).---- ( -23.20, z-score = -3.15, R) >droEre2.scaffold_4770 9325924 103 + 17746568 UAGUA----UCUAUUAGUUUGGACAUUCUUCGGGUUUCGUGUUGAUGCUAAUCAUUUAAGUGACAGUAGCAUAUUCGUGUUGCAUAACAGGUAUCGAAACAAUGGAA---- .....----((((((.((((.(((((((....))....)))))((((((..((((....))))..(((((((....)))))))......)))))).)))))))))).---- ( -24.70, z-score = -1.63, R) >droPer1.super_0 8798181 94 + 11822988 UAAAUUACUGCCCUUAAUUUGAAC-----------------UUGAUUUUAAGUAGUUAAGUAAGGUCAACUGCGUUGCCUUGAAAGAUAGUUUCCUCAAAAGUUGCGGGAA ..........(((.((((((..((-----------------((((((......))))))))((((.((((...))))))))..................)))))).))).. ( -18.70, z-score = -0.60, R) >consensus UAGUAUAACUCUAUUAGUUUGGACAUUCUUCGG_UUUCGUGUUGAUGCCAAUCAUUUAAAUGACAGUAGCAUAUUUGUGUUGCAUAACAGGUAUCGAAACAAUGGAG____ ........(((((((.(((..(((((............)))))((((((..((((....))))..(((((((....)))))))......))))))..)))))))))).... (-12.00 = -13.22 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:16 2011