| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,179,126 – 13,179,224 |
| Length | 98 |
| Max. P | 0.602203 |
| Location | 13,179,126 – 13,179,224 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 75.08 |
| Shannon entropy | 0.49308 |
| G+C content | 0.36336 |
| Mean single sequence MFE | -22.26 |
| Consensus MFE | -12.98 |
| Energy contribution | -13.33 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13179126 98 - 27905053 -----CG-AAUUUGCGAUACAUUUAAAUUGAUUUGACUUCCUCCUUGGGAUAUGUAAAUACUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGU -----..-.....(((((.((((((((....)))))....((((...(((((((((((((..((...))....)))))))))))))...))))..))).))))) ( -22.10, z-score = -1.38, R) >droWil1.scaffold_181089 1775187 103 - 12369635 UUUGCUGUUAAGGGAAACAAGUCUUUCUCUUUACAAGAGGCUUGCAAGAACAGUUUAGUCUAGCUCGAGUCAUUAUUUUGGUAGCCAUCUCACUUGCCACUCC- .....(((.((((((((......)))))))).))).(((....(((((...((((......)))).(((...((((....))))....))).)))))..))).- ( -20.20, z-score = 0.73, R) >droAna3.scaffold_13340 10390166 103 - 23697760 UAUAUUG-GAUUUUCUAGGAAUUUCACAUGAUUUGACUUCCUUCCUGGAAUAUGUAAAUAUUCGCCAUGUAAUUAUUUACAUAUUCUGUGGGGUUGUGCAUCCU ......(-(((.....(((((..(((.......))).)))))((((((((((((((((((.(..(...)..).))))))))))))))..))))......)))). ( -23.60, z-score = -1.44, R) >droSim1.chr3R 19223618 98 + 27517382 -----CG-AAUUUGCGAUACAUUUAAAUUGAUUUGACUUCCUCCUUGGGAUAUGUAAAUACUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGU -----..-.....(((((.((((((((....)))))....((((...(((((((((((((..((...))....)))))))))))))...))))..))).))))) ( -22.10, z-score = -1.38, R) >droSec1.super_12 1153883 98 + 2123299 -----CG-AAUUUGCGAUACAUUUAAAUUGAUUUGACUUCCUCCUUGGGAUAUGUAAAUACUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGU -----..-.....(((((.((((((((....)))))....((((...(((((((((((((..((...))....)))))))))))))...))))..))).))))) ( -22.10, z-score = -1.38, R) >droYak2.chr3R 17269199 98 - 28832112 -----CG-AAUUUGCGAUACAUUUAAAUUGAUUUGACUUCCUCCUUGGGAUAUGUAAAUAUUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGU -----..-.....(((((.((((((((....)))))....((((...(((((((((((((..((...))....)))))))))))))...))))..))).))))) ( -22.80, z-score = -1.65, R) >droEre2.scaffold_4770 9296325 98 + 17746568 -----CG-AAUUUGCGAUACGUUUAAAUUGAUUUGACUUCCUCCUUGGGAUAUGUAAAUAUUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCGCCGU -----..-.....(((.((((((...........)))...((((...(((((((((((((..((...))....)))))))))))))...))))..))))))... ( -22.90, z-score = -1.08, R) >consensus _____CG_AAUUUGCGAUACAUUUAAAUUGAUUUGACUUCCUCCUUGGGAUAUGUAAAUAUUCGUCUCGUAAUUAUUUACAUAUUCAGUGGGGUUGUGCAUCGU ........................................((((...(((((((((((((.............)))))))))))))...))))........... (-12.98 = -13.33 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:08 2011