| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,169,741 – 13,169,836 |
| Length | 95 |
| Max. P | 0.789840 |
| Location | 13,169,741 – 13,169,836 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 80.69 |
| Shannon entropy | 0.38795 |
| G+C content | 0.51938 |
| Mean single sequence MFE | -32.14 |
| Consensus MFE | -22.08 |
| Energy contribution | -22.17 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.789840 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13169741 95 + 27905053 CUGCUUAAGCUGUUCAUUAGCAGCGGAGUAAUGGAGCAACAGU--CUGACACAGAUUUGCUUUGGCAAGUGCGGAUGGCCCCCGCACUCGCCAAGCA- ..((((..(((((......)))))........(((((((..((--(((...))))))))))))(((.(((((((.......))))))).))))))).- ( -38.40, z-score = -2.58, R) >droWil1.scaffold_181089 1765839 93 + 12369635 AUGCUUAAGCUGUUCAUUAGCGGUCGUGUCGAAGAGCGAGAGAGACUGGCACAGAUUUAGCACGGCAGGAGUUCCAUCCAUGUGACCAUGACG----- ........((((.....))))((((((((..((..((.((.....)).)).....))..)))).((((((......))).)))))))......----- ( -24.70, z-score = 0.12, R) >droAna3.scaffold_13340 10382714 91 + 23697760 CUGCUUAAGCUGUUCAUUAGCAGCCGAGUAAUGAAGCAACAGC--CUGACACAGAUUUGCUUUGGCAAGUGUGGAAAAGACCC-CUUUUGUCAG---- .(((((..(((((......))))).))))).....((....))--(((((.((.((((((....)))))).)).(((((....-))))))))))---- ( -26.20, z-score = -1.32, R) >droEre2.scaffold_4770 9288533 95 - 17746568 CUGCUUAAGCUGUUCAUUAGCAGCGGAGUAAUGGAGCAACAGU--CUGACACAGAUUUGCUUUGGCAAGUGCGGAUG-CCCCUGCACUCGCCAAACGC .(((((..(((((......))))).)))))..(((((((..((--(((...))))))))))))(((.(((((((...-...))))))).)))...... ( -36.00, z-score = -2.24, R) >droYak2.chr3R 17260968 94 + 28832112 CUGCUUAAGCUGUUCAUUAGCAGCGGAGUAAUGGAGCAACAGU--CUGACACAGAUUUGGUUUGGCAAGUGCGGAUG-CCCCUUCACUCGCCAAGUG- .(((((..(((((......))))).)))))...((((...(((--(((...))))))..))))(((.((((.((...-...)).)))).))).....- ( -26.90, z-score = 0.13, R) >droSec1.super_12 1146133 95 - 2123299 CUGCUUAAGCUGUUCAUUAGCAGCGGAGUAAUGGAGCAACAGU--CUGACACAGAUUUGCUUUGGCAAGUGCGGAUGGCCCCCGCACUCGCCAAGCG- ..((((..(((((......)))))........(((((((..((--(((...))))))))))))(((.(((((((.......))))))).))))))).- ( -38.40, z-score = -2.67, R) >droSim1.chr3R 19215155 95 - 27517382 CUGCUUAAGCUGUUCAUUAGCAGCGGAGUAAUGGAGCAACAGU--CUGACACAGAUUUGCUUUGGCAAGUGCGGAUGGCCCCGGCACUCGCCAAACG- .(((((..(((((......))))).)))))..(((((((..((--(((...))))))))))))(((.(((((((......)).))))).))).....- ( -34.40, z-score = -1.74, R) >consensus CUGCUUAAGCUGUUCAUUAGCAGCGGAGUAAUGGAGCAACAGU__CUGACACAGAUUUGCUUUGGCAAGUGCGGAUGGCCCCCGCACUCGCCAAGCG_ .(((((..(((((......))))).........)))))......................((((((.(((((((.......))))))).))))))... (-22.08 = -22.17 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:07 2011