| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,169,470 – 13,169,575 |
| Length | 105 |
| Max. P | 0.570816 |
| Location | 13,169,470 – 13,169,575 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 77.64 |
| Shannon entropy | 0.36672 |
| G+C content | 0.29134 |
| Mean single sequence MFE | -19.00 |
| Consensus MFE | -10.24 |
| Energy contribution | -9.80 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570816 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13169470 105 - 27905053 AUACAAAUAAUUUCCCGCUCUAAAAUACA-------------AACUUUGGAAACUACUCCAUUAUUUUAAGGAAUGUAUAAAACUU-GAAAUUGGAGCCAGAAAUAUUACACAUCUCUG .........(((((..(((((((......-------------.....((((......))))...(((((((............)))-)))))))))))..))))).............. ( -18.70, z-score = -3.27, R) >droSim1.chr3R 19214871 118 + 27517382 AUACAAAUAAUUUCCUGUUCUAAAAUACAUGCUUAGCUUAGCAAUUUUAGAAACUACUACAUUCUUUUAAAGUAUGUUUAAAACUU-GAAAUUGGAGUCAGAAAUAUUACACAUCUCUG .......(((((((..((((((((((...((((......)))))))))))((((((((............)))).))))..)))..-)))))))....((((.((.......)).)))) ( -15.70, z-score = -0.42, R) >droSec1.super_12 1145849 118 + 2123299 AUACAAAUUAUUUCCCGCUCUAAAAUACAUGCUUAGCUUAGCAAUUUUAGUAACUACUACAUUCUUUUAAAGUAUGUAUAAAACUU-GAAAUUGGAGUCAGAAAUAUUACACAUCUCUG ........((((((..(((((((.((((((((((.((...)).....((((....))))..........)))))))))).......-....)))))))..))))))............. ( -19.40, z-score = -1.95, R) >droYak2.chr3R 17260659 119 - 28832112 ACCAAAAUAAUAGCCCACUCUAAAAUCAGGGCUUUAUUUAGCCAUUUUUGAUACUAUUCCAUUCUUUUAGGAAAGUCGGAAAUUUUCGAAAUUGGAGUCCAAAAUAUUACACAUCUCUG ....((((((.(((((............)))))))))))..(((.((((((.....((((...((((....))))..))))....)))))).)))........................ ( -22.20, z-score = -1.75, R) >consensus AUACAAAUAAUUUCCCGCUCUAAAAUACAUGCUUAGCUUAGCAAUUUUAGAAACUACUACAUUCUUUUAAAGAAUGUAUAAAACUU_GAAAUUGGAGUCAGAAAUAUUACACAUCUCUG .........(((((..(((((((......((((......)))).....................((((.((((.........)))).)))))))))))..))))).............. (-10.24 = -9.80 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:06 2011