| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,168,887 – 13,168,998 |
| Length | 111 |
| Max. P | 0.743574 |
| Location | 13,168,887 – 13,168,998 |
|---|---|
| Length | 111 |
| Sequences | 7 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 69.19 |
| Shannon entropy | 0.55596 |
| G+C content | 0.39646 |
| Mean single sequence MFE | -28.41 |
| Consensus MFE | -13.08 |
| Energy contribution | -13.83 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.743574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13168887 111 + 27905053 GAAUGUCCAGCGUUGGUUUACCAUCAGUGUGCUCAUGGGAUUUAUGGUAUUUAUAUGUCC--CUGAUUAUUAUGCACUUUCGGUAGAGCAUA-AAUUGAUGGAAACGAGUUUAC-- .((((.....)))).((((.((((((((((((((..(((((.((((.....)))).))))--).........(((.......))))))))).-.))))))))))))........-- ( -30.40, z-score = -1.81, R) >droPer1.super_0 8756643 103 - 11822988 -------------AAAUAGAUCGCGGCAUUGUCCACCGGAUUUUAUGGAAAUAUGGCCAGGGCCAGGGACUAUGCAGAUUCAGUGCAGUUCGUAAUUGACGAAUAAAAGUUGUUAU -------------.....((((...((((.((((.(((.......))).....((((....)))).)))).)))).)))).......((((((.....))))))............ ( -27.50, z-score = -1.29, R) >dp4.chr2 21535217 97 - 30794189 -------------AAAUAGAUCGUGGCAUUGUCCACCGGAUUUUAUGGAGAUAUGGCC------AGGGACUAUGCAGAUUCAGUGCAGUUCGUAAUUGACGAAUAAAAGUUGUUAU -------------..((((.((.((((..((((..(((.......))).))))..)))------).)).))))(((.......))).((((((.....))))))............ ( -22.10, z-score = -0.51, R) >droEre2.scaffold_4770 9287712 111 - 17746568 GAAUGCCCAGCGCUGGUUUACCAUCAGUGUGCUCAUGGGAUUUAUGGUAUUUAUAUGCCG--CUGAUUAUUAUGCACUUUCGAUAGAGCAUA-AAUUGAUGGAAACGAGUUUAC-- ...........(((.((((.((((((((((((((((.(((.....(((((....)))))(--(..........))...))).)).)))))).-.)))))))))))).)))....-- ( -33.30, z-score = -2.57, R) >droYak2.chr3R 17260066 111 + 28832112 GAAUGUCCACCGUUGGUUUACCAUCAGUGUGCUUAUGGGAUUUAUGGUAUUUAUAUGUCG--CUGAUUAUUAUGCACUUUCGGUAGAGCAUA-AAUUGAUGGAAACGAGUUUAC-- ............((.((((.((((((((((((((((.(((..(((((((.(((.......--.))).)))))))....))).)).)))))).-.)))))))))))).)).....-- ( -24.80, z-score = -0.26, R) >droSec1.super_12 1145265 111 - 2123299 GAAUGUCCAGCGUUGGUUUACCAUCAGUGUGCUCAUGGGAUUUAUGGUAUUUAUAUGUCC--CUGAUUAUUAUGCACUUUCGGUAGAGCAUA-AAUUGAUGGAAACGAGUUUAC-- .((((.....)))).((((.((((((((((((((..(((((.((((.....)))).))))--).........(((.......))))))))).-.))))))))))))........-- ( -30.40, z-score = -1.81, R) >droSim1.chr3R 19214287 111 - 27517382 GAAUGUCCAGCGUUGGUUUACCAUCAGUGUGCUCAUGGGAUUUAUGGUAUUUAUAUGUCC--CUGAUUAUUAUGCACUUUCGGUAGAGCAUA-AAUUGAUGGAAACGAGUUUAC-- .((((.....)))).((((.((((((((((((((..(((((.((((.....)))).))))--).........(((.......))))))))).-.))))))))))))........-- ( -30.40, z-score = -1.81, R) >consensus GAAUGUCCAGCGUUGGUUUACCAUCAGUGUGCUCAUGGGAUUUAUGGUAUUUAUAUGUCC__CUGAUUAUUAUGCACUUUCGGUAGAGCAUA_AAUUGAUGGAAACGAGUUUAC__ ...............((((.((((((((((((((((.(((......((((......(((.....)))....))))...))).)).))))))...)))))))))))).......... (-13.08 = -13.83 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:22:05 2011