| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,683,752 – 7,683,848 |
| Length | 96 |
| Max. P | 0.727986 |
| Location | 7,683,752 – 7,683,848 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 86.46 |
| Shannon entropy | 0.29816 |
| G+C content | 0.58073 |
| Mean single sequence MFE | -35.62 |
| Consensus MFE | -25.24 |
| Energy contribution | -25.67 |
| Covariance contribution | 0.43 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.727986 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7683752 96 + 23011544 AGUGGUCCUCUGGGGCCGAAUGUCAAAGAGAAGUCUAUGAUGUUCGAGCAGGCAUUGCGUCUGCGUAGAGAUGUGCCCACCAAGCUCCUUUCCCGC .((((......((((((((((((((.(((....))).))))))))).((((((.....))))))...................)))))....)))) ( -32.20, z-score = -1.34, R) >droSim1.chr2L 7481240 96 + 22036055 AGUGGUCCUCUGGGGCCGAAUGUCAAAGAGAAGUCUAUGAUGUUCGAGCAGGCAUUGCGCCUGCGCAGAGAUGUGCCCACCAAGCUCCUUUCCCGC .((((......((((((((((((((.(((....))).))))))))).((((((.....))))))(((......))).......)))))....)))) ( -35.90, z-score = -1.89, R) >droSec1.super_3 3197497 96 + 7220098 AGUGGUCCUCUGGGGCCGAAUGUCAAAGAGAAGUCUAUGAUGUUCGAGCAGGCAUUGCGCCUGCGCAGAGACGUGCCCACCAAGCUCCUUUCCCGC .((((......((((((((((((((.(((....))).))))))))).((((((.....))))))(((......))).......)))))....)))) ( -35.90, z-score = -1.75, R) >droYak2.chr2L 17115986 96 - 22324452 AGUGGUCCUCUGGGGCCGAAUGUCAAAGAGAAGUCUAUGAUGUUCGAGCAGGCACUGCGCCUGCGCAGAGAUGUGCCCACCAAGCUCCUUUCCCGC .((((......((((((((((((((.(((....))).))))))))).((((((.....))))))(((......))).......)))))....)))) ( -35.90, z-score = -1.66, R) >droEre2.scaffold_4929 16612394 96 + 26641161 AGUGGUCCUCUGGGGCCGAAUGUCAAAGAGAAGUCUAUGAUGUUCGAGCAGGCAUUGCGCCUGCGCAGAGAUGUGCCCACCAAGCUCCUUUCCCGC .((((......((((((((((((((.(((....))).))))))))).((((((.....))))))(((......))).......)))))....)))) ( -35.90, z-score = -1.89, R) >droAna3.scaffold_12916 15632005 96 + 16180835 AGUGGUCCCCUUGGGCCGAAUGUCAAAGAGAAGUCUCUGAUGUUCGAACAGGCCCUGCGCCUACGCCGAGAUGUGCCCACCAAGCUCCUGUCGCGU ...(((((....)))))((((((((..(((....)))))))))))....((((.....))))((((.((.(.(.((.......)).).).)))))) ( -28.90, z-score = -0.62, R) >dp4.chr4_group3 1577419 96 + 11692001 AGUGGGCCCCUGGGGCCGAAUGUCAAGGCGAAGUCUCUGAUGUUCGAGCGGGAGCUGCGCCUGCGCAAAGACGUGCCCACGAAGCUCCUGUCCCGG ....(((((...)))))((((((((((((...)))).))))))))(..((((((((.((...((((......))))...)).))))))))..)... ( -41.70, z-score = -1.24, R) >droPer1.super_1 3048567 96 + 10282868 AGUGGUCCCCUGGGGCCGAAUGUCAAGGCGAAGUCUCUGAUGUUCGAGCGGGAGCUGCGCCUGCGCAAAGACGUGCCCACGAAGCUCCUGUCCCGG ...(((((....)))))((((((((((((...)))).))))))))(..((((((((.((...((((......))))...)).))))))))..)... ( -42.00, z-score = -1.90, R) >droWil1.scaffold_180703 699539 96 - 3946847 AGUGGUCCGCUGGGGCCGAAUGUCAAAGAGAAGUCUCUGAUGUUCGAGCGUGAACUGCGCCUGCGCAAAGACAUACCAACCAAAUUGCUGUCCCGU ((((...))))((((((((((((((..(((....))))))))))))((((....)((((....))))...................)))))))).. ( -28.40, z-score = -0.63, R) >droVir3.scaffold_13246 2198982 96 - 2672878 AGUGGUCCAUUGGGGCCGAAUGUCAAGGAGAAGUCCUUGAUAUUCGAGCGGCAAUUGCGCCUACGCAAAGAUGUCCCCACCAAGCUGCUGUCCCGA .........((((((((((((((((((((....)))))))))))))((((((..(((((....))))).(.((....)).)..))))))))))))) ( -41.20, z-score = -4.06, R) >droMoj3.scaffold_6500 31919068 96 - 32352404 AGUGGUCCACUGGGGCCGAAUGUCAAGGAGAAGUCUUUGAUAUUCGAGCGGCAGUUGCGCUUGCGCAAAGACGUCCCCACCAAGCUGCUGUCCCGC ((((...))))((((((((((((((((((....)))))))))))))((((((..(((((....)))))....((....))...))))))))))).. ( -39.30, z-score = -2.49, R) >droGri2.scaffold_15252 16786220 96 + 17193109 AGUGGUCCCCUGGGACCGAAUGUCAAAGAGAAAUCGCUGAUCUUUGAGCGUCAGUUGAGACUGCGCAAAGAUGUGCCCACCAAGCUGCUCUCCAGA ...(((((....)))))(((.((((..((....))..)))).)))(((.(.(((((......(((((....)))))......)))))).))).... ( -30.10, z-score = -1.32, R) >consensus AGUGGUCCUCUGGGGCCGAAUGUCAAAGAGAAGUCUAUGAUGUUCGAGCAGGAAUUGCGCCUGCGCAAAGAUGUGCCCACCAAGCUCCUGUCCCGC ((..((....(((((((((((((((.(((....))).))))))))).)).....(((((....))))).......))))....))..))....... (-25.24 = -25.67 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:17 2011