| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,106,961 – 13,107,060 |
| Length | 99 |
| Max. P | 0.737269 |
| Location | 13,106,961 – 13,107,060 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 69.27 |
| Shannon entropy | 0.52689 |
| G+C content | 0.41572 |
| Mean single sequence MFE | -22.82 |
| Consensus MFE | -9.66 |
| Energy contribution | -8.74 |
| Covariance contribution | -0.92 |
| Combinations/Pair | 1.61 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.737269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13106961 99 - 27905053 GUUACCCGCUCUCUCUC---UCCAAUUAUCUUUUCCAGUGUAGUUCCAUAGAUAUACCACGUC----UACAUAUGUAUAUGUGGUCUGCCCUGAGUGCUGGUGAAA .(((((.((.((((((.---...((((((((.....)).))))))....)))...(((((((.----(((....))).))))))).......))).)).))))).. ( -24.00, z-score = -2.60, R) >droAna3.scaffold_13340 10323925 100 - 23697760 AUUAUUGAAACUUUUUUAUGUUCGAAAAAAUGUGUAUAUUUUCUUCUGUUGGGGUCCUGUAUC----UAUAAAGUUAUA--UGACCUGCCCCGAGUGUUUAACGAA .(..(((((((((..........(((((((((....)))))).))).....(((((.((((.(----(....)).))))--.))))).....)))).)))))..). ( -13.60, z-score = 0.20, R) >droYak2.chr3R 17194725 101 - 28832112 GUUGCUCG--CGCUCUG---CUCAAAUAUCUUUCCCAGUGUAGUUCCAUAGAUACACCACGUCCAUAUAUGUAUGUAUAUGUGGUCUGCCCUGAGUGCUGGUGAAA .(..((.(--(((((.(---(................(((((..........)))))...(.(((((((((....))))))))).).))...)))))).))..).. ( -27.90, z-score = -2.18, R) >droSec1.super_12 1084432 94 + 2123299 ---ACCCA--CGUUCUC---UGCAAUUAUCUUUUCCAGUGUAGUUUCACACAUAUACCACGAC----UACAUAUGUAUAUGUGGUCUGCCCUGAGUGCUGGUGAAA ---.((((--.((.(((---.(((.............((((......)))).........(((----((((((....))))))))))))...))).))))).)... ( -23.90, z-score = -1.72, R) >droSim1.chr3R 19152843 97 + 27517382 GUUACCCG--CGUUCUC---UCCAAUUAUCUUUUCCAGUGUAGUUCCACACAUAUACCACGUC----UACAUAUGUAUAUGUGGUCUGCCCUGAGUGCUGGUGAAA .(((((.(--(((((..---.................((((......))))....(((((((.----(((....))).))))))).......)))))).))))).. ( -24.70, z-score = -2.53, R) >consensus GUUACCCG__CGUUCUC___UCCAAUUAUCUUUUCCAGUGUAGUUCCAUAGAUAUACCACGUC____UACAUAUGUAUAUGUGGUCUGCCCUGAGUGCUGGUGAAA ..............................(((((((((((((..(((((.(((((.................))))).))))).)))).......))))).)))) ( -9.66 = -8.74 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:54 2011