| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,101,015 – 13,101,105 |
| Length | 90 |
| Max. P | 0.968803 |
| Location | 13,101,015 – 13,101,105 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 72.24 |
| Shannon entropy | 0.52068 |
| G+C content | 0.45753 |
| Mean single sequence MFE | -26.22 |
| Consensus MFE | -11.73 |
| Energy contribution | -13.40 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.968803 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13101015 90 + 27905053 -----UGAUAGAUCAAUUGAAUGGAACACUCAG-CCCUGUUUACAGACGGGGUUGAUGCGGCCAUUGAAUUGAUGACGCUUCAUCCAAGUUGUCUG -----......(((((((.(((((..((.((((-(((((((....)))))))))))))...))))).)))))))(((((((.....))).)))).. ( -34.70, z-score = -4.33, R) >droEre2.scaffold_4770 9219479 88 - 17746568 -----UCAU-GACCAAUUGAAUGGAACAUUCAA-CCCUGUUUACAGACGGCUU-GAAGCGGCCAUUAAAUUGAUGACGCUCCGUCCAAGUUGUCUG -----....-......(((((((...)))))))-.........((((((((((-(.((((..((((.....)))).)))).....))))))))))) ( -24.90, z-score = -2.54, R) >droYak2.chr3R 17188634 90 + 28832112 -----UCAUUGAUCAAUUGAGUGGAACAUUCAA-CCCCAUUUGCAGACGGCAUAGAAGCGACCAUUGAAUUGAUGACGCUCCAUCCAAGUUGUCUG -----...........(((((((...)))))))-.........((((((((...((((((..((((.....)))).))))...))...)))))))) ( -19.00, z-score = -0.24, R) >droSec1.super_12 1077604 88 - 2123299 -----UGAUAGAUCAAUUGAAUGGAACACUCAGGCCCUGUUUACAGACGGGGUUGAAGCGGCCAUUGAAUUGAUGACGCUCCAUCCA---UGUCUG -----......(((((((.(((((..(.((..(((((((((....)))))))))..)).).))))).)))))))((((.........---)))).. ( -28.90, z-score = -2.37, R) >droSim1.chr3R 19146816 91 - 27517382 -----UGAUAGAUCAAUUGAAUGGAACACUCAGGCCCUGUUUACAGACGGGGUUGAAGCGGCCAUUGAAUUGAUGACGCUCCAUCCAAGUUGUCUG -----......(((((((.(((((..(.((..(((((((((....)))))))))..)).).))))).)))))))((((((.......)).)))).. ( -30.30, z-score = -2.55, R) >droMoj3.scaffold_6540 17621248 93 + 34148556 UUUGCACUUUGAGCAAUUUAUUUG---CUUUAACAUCUUCAGACAGAUUCAGCAAGGUCGACCCUCGCCUCGUCCAUUUGUCUUCGACGUACUCAG ..........((((((.....)))---)))..((.((...((((((((...((.(((.((.....))))).))..))))))))..)).))...... ( -19.50, z-score = -1.77, R) >consensus _____UCAUAGAUCAAUUGAAUGGAACACUCAA_CCCUGUUUACAGACGGGGUUGAAGCGGCCAUUGAAUUGAUGACGCUCCAUCCAAGUUGUCUG ........(((((...(((.(((((..........((((((....))))))......(((..((((.....)))).)))))))).)))...))))) (-11.73 = -13.40 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:53 2011