| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,093,617 – 13,093,674 |
| Length | 57 |
| Max. P | 0.772121 |
| Location | 13,093,617 – 13,093,674 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 91.49 |
| Shannon entropy | 0.14943 |
| G+C content | 0.42350 |
| Mean single sequence MFE | -10.16 |
| Consensus MFE | -10.14 |
| Energy contribution | -10.10 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.90 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772121 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13093617 57 - 27905053 GCUAAGCUGUCCUCGCUCAACAGCUGUUCACUCAGACAAAAUUAUUAGCUGGAAUUU ((((((((((.........)))))((((......))))......)))))........ ( -10.70, z-score = -0.68, R) >droEre2.scaffold_4770 9212566 56 + 17746568 GCUAAGCUGUCCUCACUCAACAGCUGUUCACUCAAACAAAACGAUAAGCUGCAAUU- (((.((((((.........))))))(((......))).........))).......- ( -8.40, z-score = -0.94, R) >droYak2.chr3R 17180404 56 - 28832112 GCUAAGCUGUCCUCACUCAACAGCUGUUCACUCAAACAAAAUGAUUAGCUGGUGCU- ((((((((((.........)))))((((......))))......))))).......- ( -10.30, z-score = -0.34, R) >droSec1.super_12 1070309 56 + 2123299 GCUAAGCUGUCCUCACUCAACAGCUGUUCACUCAGACAAAAUUAUUAGCUGGAAAU- ((((((((((.........)))))((((......))))......))))).......- ( -10.70, z-score = -1.26, R) >droSim1.chr3R 19139348 56 + 27517382 GCUAAGCUGUCCUCACUCAACAGCUGUUCACUCAGACAAAAUUAUUAGCUGGAAAU- ((((((((((.........)))))((((......))))......))))).......- ( -10.70, z-score = -1.26, R) >consensus GCUAAGCUGUCCUCACUCAACAGCUGUUCACUCAGACAAAAUUAUUAGCUGGAAAU_ ((((((((((.........)))))((((......))))......)))))........ (-10.14 = -10.10 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:52 2011