Locus 10327

Sequence ID dm3.chr3R
Location 13,081,466 – 13,081,577
Length 111
Max. P 0.932844
window14198

overview

Window 8

Location 13,081,466 – 13,081,577
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 89.79
Shannon entropy 0.16419
G+C content 0.39829
Mean single sequence MFE -28.25
Consensus MFE -26.06
Energy contribution -25.88
Covariance contribution -0.19
Combinations/Pair 1.11
Mean z-score -1.81
Structure conservation index 0.92
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.37
SVM RNA-class probability 0.932844
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 13081466 111 - 27905053
UUCAAUCAAUUAAAUUCUCAAAUUCAUAGAAAAGUUGUGCGCUUCAAGCUGGACGUGUUCUCAGUGAAUUGCUGAUAUUUUCCGGCUUAGGCGAAUAGCUGAACACUUUUG
................................((((((.(((((.((((((((...((..(((((.....))))).))..))))))))))))).))))))........... ( -28.00, z-score =  -1.73, R)
>droSim1.chr3R 19126727 111 + 27517382
UUCAAUCAAUUAAAUUCUCAAAUUCAUAGAAAAGUUGUGCGCUUCAAGCCGGACGUGUUCUCAGUGAAUUGCUGAUAUUUUCCGGUUUAGGCGAACAGCUGAACACUUUUG
................................((((((.(((((.((((((((...((..(((((.....))))).))..))))))))))))).))))))........... ( -29.70, z-score =  -2.34, R)
>droSec1.super_12 1047953 111 + 2123299
UUCAAUCAAUUAAAUUCUCAAAUUCAUAGAAAAGUUGUGCGCUUCAAGCCGGACGUGUUCUCAGUGAAUUGCUGAUAUUUUCCGGUUUAGGCGAACAGCUGAACACUUUUG
................................((((((.(((((.((((((((...((..(((((.....))))).))..))))))))))))).))))))........... ( -29.70, z-score =  -2.34, R)
>droEre2.scaffold_4770 9200248 100 + 17746568
---------UUCAGUU--CGAAUUCAUAGAAAAGUUGUGCGCUUCACGCUGGACGUGUUCCCAGUGAAUUGUUGAUAUCUUCCGGCUUAGGCAAACAGCUGAACACUUUUG
---------....(((--((....).......((((((..((((...((((((.(((((..(((....)))..)))))..))))))..))))..))))))))))....... ( -25.60, z-score =  -0.83, R)
>consensus
UUCAAUCAAUUAAAUUCUCAAAUUCAUAGAAAAGUUGUGCGCUUCAAGCCGGACGUGUUCUCAGUGAAUUGCUGAUAUUUUCCGGCUUAGGCGAACAGCUGAACACUUUUG
................................((((((.(((((.((((((((.(((((..(((....)))..)))))..))))))))))))).))))))........... (-26.06 = -25.88 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:48 2011