| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,061,643 – 13,061,755 |
| Length | 112 |
| Max. P | 0.807734 |
| Location | 13,061,643 – 13,061,755 |
|---|---|
| Length | 112 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.70 |
| Shannon entropy | 0.08712 |
| G+C content | 0.41791 |
| Mean single sequence MFE | -28.37 |
| Consensus MFE | -25.21 |
| Energy contribution | -25.24 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13061643 112 + 27905053 GCGUAAUUUACGAGACACUCUUAAGAAGCCAAGCGCUUUAAUUAAGCAUGUGGCUGAGGCA--------GCGACCCGAAAGUGAAAAUACCCUCAUAUUUCUUGUGAUUUACCUUUACGG ..((((.((((((((...........(((((...((((.....))))...)))))((((..--------.....((....).).......)))).....)))))))).))))........ ( -28.74, z-score = -2.09, R) >droPer1.super_0 8653414 112 - 11822988 GUGUAAUUUACGAGAAACUCUUAAGAAGCCAAGCGCUUUAAUUAAGCAUGUGGCUGGGGCA--------GCGACCCAAAAGUGAAAAUACCCUCAUAUUUCUUGUGAUUUACCUUUAUGG ..((((.((((((((((.........(((((...((((.....))))...)))))(((...--------....)))....((((........)))).)))))))))).))))........ ( -30.30, z-score = -2.23, R) >dp4.chr2 21432444 112 - 30794189 GUGUAAUUUACGAGAAACUCUUAAGAAGCCAAGCGCUUUAAUUAAGCAUGUGGCUGGGGCA--------GCGACCCAAAAGUGAAAAUACCCUCAUAUUUCUUGUGAUUUACCUUUAUGG ..((((.((((((((((.........(((((...((((.....))))...)))))(((...--------....)))....((((........)))).)))))))))).))))........ ( -30.30, z-score = -2.23, R) >droAna3.scaffold_13340 10280840 112 + 23697760 GCGUAAUUUACGAGACACUCUUAAGAAGCCAAGCGCUUUAAUUAAGCAUGUGGCUGAGGCA--------GCGACCCGAAAGUGAAAAUACCCUCAUAUUUCUUGUGAUUUACCUUUAUGC ..((((.((((((((...........(((((...((((.....))))...)))))((((..--------.....((....).).......)))).....)))))))).))))........ ( -28.74, z-score = -2.21, R) >droEre2.scaffold_4770 9180485 112 - 17746568 GCGUAAUUUACGAGACACUCUUAAGAAGCCAAGCGCUUUAAUUAAGCAUGUGGCUGAGGCA--------GCGACCCGAAAGUGAAAAUACCCUCAUAUUUCUUGUGAUUUACCUUUACGG ..((((.((((((((...........(((((...((((.....))))...)))))((((..--------.....((....).).......)))).....)))))))).))))........ ( -28.74, z-score = -2.09, R) >droYak2.chr3R 17147086 112 + 28832112 GCGUAAUUUACGAGACACUCUUAAGAAGCCAAGCGCUUUAAUUAAGCAUGUGGCUGAGGCA--------GCGACCCGAAAGUGAAAAUACCCUCAUAUUUCUUGUGAUUUACCUUUACGG ..((((.((((((((...........(((((...((((.....))))...)))))((((..--------.....((....).).......)))).....)))))))).))))........ ( -28.74, z-score = -2.09, R) >droSec1.super_12 1028610 112 - 2123299 GCGUAAUUUACGAGACACUCUUAAGAAGCCAAGCGCUUUAAUUAAGCAUGUGGCUGAGGCA--------GCGACCCGAAAGUGAAAAUACCCUCAUAUUUCAUGUGAUUUACCUUUACGG ..((((.(((((.((...........(((((...((((.....))))...)))))((((..--------.....((....).).......)))).....)).))))).))))........ ( -24.24, z-score = -0.74, R) >droSim1.chr3R 19104680 112 - 27517382 GCGUAAUUUACGAGACACUCUUAAGAAGCCAAGCGCUUUAAUUAAGCAUGUGGCUGAGGCA--------GCGACCCGAAAGUGAAAAUACCCUCAUAUUUCUUGUGAUUUACCUUUACGG ..((((.((((((((...........(((((...((((.....))))...)))))((((..--------.....((....).).......)))).....)))))))).))))........ ( -28.74, z-score = -2.09, R) >droWil1.scaffold_181089 1663877 120 + 12369635 GCGUAAUUUACGAGAAACUCUUAAGAAGCCAAGCGCUUUAAUUAAGCAUGUGGCUGAGGCACAGAGGCAGCGACCCAAAAGUGAAAAUACCCUCAUAUUUCUUGUGAUUUACCUUUAUGG ..((((.((((((((((.........(((((...((((.....))))...)))))((((....(.((......)))....((....))..))))...)))))))))).))))........ ( -30.10, z-score = -1.49, R) >droVir3.scaffold_13047 14159581 112 + 19223366 GCGUAAUUUACGAGAAACUCUUAAGACGCCAAGCGCUUUAAUUAAGCAUGUGGCUGAGGCA--------GCGACCCAAAAGUGUAAAUACCCUCAUAUUUCUUGUGAUUUACCUUUAUGG ..((((.((((((((((..........((((...((((.....))))...))))(((((..--------...((.(....).))......)))))..)))))))))).))))........ ( -28.80, z-score = -2.19, R) >droMoj3.scaffold_6540 17576158 112 + 34148556 GCGUAAUUUACGAGAAACUCUUAAGACGGCAAGCGCUUUAAUUAAGCAUGUGGCUGAGGCA--------GCGACCCAAAAGUGUAAAUACCCUCAUAUUUCUUGUGAUUUACCUUUAUGG ..((((.((((((((((..........(.((...((((.....))))...)).)(((((..--------...((.(....).))......)))))..)))))))))).))))........ ( -24.20, z-score = -0.30, R) >droGri2.scaffold_14830 474398 112 - 6267026 GCGUAAUUUACGAGAAACUCUUAAGACGCCAAGCGCUUUAAUUAAGCAUGUGGCUGAGGCA--------GCGACCCAAAAGUGUAAAUACCCUCAUAUUUCUUGUGAUUUACCUUUAUGG ..((((.((((((((((..........((((...((((.....))))...))))(((((..--------...((.(....).))......)))))..)))))))))).))))........ ( -28.80, z-score = -2.19, R) >consensus GCGUAAUUUACGAGAAACUCUUAAGAAGCCAAGCGCUUUAAUUAAGCAUGUGGCUGAGGCA________GCGACCCAAAAGUGAAAAUACCCUCAUAUUUCUUGUGAUUUACCUUUAUGG ..((((.((((((((............((((...((((.....))))...))))(((((..........((.........))........)))))....)))))))).))))........ (-25.21 = -25.24 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:45 2011