Locus 10323

Sequence ID dm3.chr3R
Location 13,052,829 – 13,052,923
Length 94
Max. P 0.965676
window14193

overview

Window 3

Location 13,052,829 – 13,052,923
Length 94
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 92.82
Shannon entropy 0.11245
G+C content 0.51664
Mean single sequence MFE -27.23
Consensus MFE -25.66
Energy contribution -25.28
Covariance contribution -0.38
Combinations/Pair 1.11
Mean z-score -2.10
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.75
SVM RNA-class probability 0.965676
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 13052829 94 - 27905053
-------AUCCAGAGCGGCAGCGGCAACAGCAGCGACAUCCCAGUUGCAGAUGCAACAUAACCACAUCAUAAACGUUGCAACCACAGUUGCACGCAUGAAU
-------.......(((((((((....).((((((......).(((((....))))).................))))).......))))).)))...... ( -27.10, z-score =  -2.54, R)
>droEre2.scaffold_4770 9171892 101 + 17746568
AUCCAGAAUCCAGGGAGGCCGUGGCAACAGCAGCGCCAUCCCAGCUGCAGAUGCAACAUAACCACAUCAUAAACGUUGCAGCCACAGUUGCACGCAUGAAU
............(((((((.((.((....)).))))).)))).(((((((.((((((.................)))))).......))))).))...... ( -27.63, z-score =  -0.78, R)
>droSec1.super_12 1019792 94 + 2123299
-------AUCCAGAGCGGCAGCGGCAACAGCAGCGACAUCCCAGUUGCAGAUGCAACAUAACCACAUCAUAAACGUUGCAACCACAGUUGCACGCAUGAAU
-------.......(((((((((....).((((((......).(((((....))))).................))))).......))))).)))...... ( -27.10, z-score =  -2.54, R)
>droSim1.chr3R 19095835 94 + 27517382
-------AUCCAGAGCGGCAGCGGCAACAGCAGCGACAUCCCAGUUGCAGAUGCAACAUAACCACAUCAUAAACGUUGCAACCACAGUUGCACGCAUGAAU
-------.......(((((((((....).((((((......).(((((....))))).................))))).......))))).)))...... ( -27.10, z-score =  -2.54, R)
>consensus
_______AUCCAGAGCGGCAGCGGCAACAGCAGCGACAUCCCAGUUGCAGAUGCAACAUAACCACAUCAUAAACGUUGCAACCACAGUUGCACGCAUGAAU
....................((((((((.(((((.........)))))...((((((.................))))))......))))).)))...... (-25.66 = -25.28 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:44 2011