| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,050,079 – 13,050,136 |
| Length | 57 |
| Max. P | 0.585267 |
| Location | 13,050,079 – 13,050,136 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 93.51 |
| Shannon entropy | 0.11708 |
| G+C content | 0.44912 |
| Mean single sequence MFE | -14.08 |
| Consensus MFE | -13.16 |
| Energy contribution | -13.00 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13050079 57 - 27905053 UUCUUGCUGUUACCGCUGCCGAUGGUGGUGCAAACCGAAUAUGCAUCAUCAUAAUAA .....((.((....)).))..(((((((((((.........)))))))))))..... ( -14.00, z-score = -1.23, R) >droSim1.chr3R 19093085 57 + 27517382 UUCUUGCUGUUACCGCUGCCGAUGGUGGUGCAAACCGAAUAUGCAUCAUCAUAAUAA .....((.((....)).))..(((((((((((.........)))))))))))..... ( -14.00, z-score = -1.23, R) >droSec1.super_12 1017032 57 + 2123299 UUCUUGCUGUUACCGCUGCCGAUGGUGGUGCAAACCGAAUAUGCAUCAUCAUAAUAA .....((.((....)).))..(((((((((((.........)))))))))))..... ( -14.00, z-score = -1.23, R) >droYak2.chr3R 17135216 57 - 28832112 UUCUUGCUGUUACCGAUGCCGAUGGUGGUGCAAACCGAAAAUGCAUCAUCAUUAUAA ....................((((((((((((.........)))))))))))).... ( -14.40, z-score = -1.62, R) >droEre2.scaffold_4770 9169213 57 + 17746568 CUCCUGCUGUUGCCGUUGCCGAUGGUGGUGCAAGCCGAAAAUGCAUCAUCGUAAUAA .......((((((((....))..(((((((((.........))))))))))))))). ( -14.00, z-score = -0.50, R) >consensus UUCUUGCUGUUACCGCUGCCGAUGGUGGUGCAAACCGAAUAUGCAUCAUCAUAAUAA .....................(((((((((((.........)))))))))))..... (-13.16 = -13.00 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:43 2011