| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,046,134 – 13,046,246 |
| Length | 112 |
| Max. P | 0.697597 |
| Location | 13,046,134 – 13,046,246 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 88.45 |
| Shannon entropy | 0.22789 |
| G+C content | 0.53125 |
| Mean single sequence MFE | -32.20 |
| Consensus MFE | -24.23 |
| Energy contribution | -24.73 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13046134 112 + 27905053 GUGUCCACCUUCGAUGGCACAUCCUGCAUUUGUCCUGUAGCCUGGUGUCGCCUUCGAUGCUCGCUAAUCCAUUACCAGCGUCAUUAAUCUAAUGAGCUGGUGCUGCUCGGCG ..........((((.(((((((((((((.......)))))...))))).))).))))....((((....((.(((((((.((((((...))))))))))))).))...)))) ( -36.50, z-score = -2.52, R) >droSim1.chr3R 19089039 112 - 27517382 GUGUCCUCCUUCGAUGGCACAUCCUGCAUUUGUCCUGUAGCCUGGUGUCGCCUUCGAUGCUCGCUAAUCCAUUACCAGCGUCAUUAAUCUAAUGAGCUGGUGCUGCUCGGCG ..........((((.(((((((((((((.......)))))...))))).))).))))....((((....((.(((((((.((((((...))))))))))))).))...)))) ( -36.50, z-score = -2.83, R) >droSec1.super_12 1013112 112 - 2123299 GUGUCCUCCUUCGAUGGCACAUCCUGCAUUUGUCCUGUAGCCUGGUGUCGCCUUCGAUGCUCGCUAAUCCAUUACCAGCGUCAUUAAUCUAAUGAGCUGGUGCUGCUCGGCG ..........((((.(((((((((((((.......)))))...))))).))).))))....((((....((.(((((((.((((((...))))))))))))).))...)))) ( -36.50, z-score = -2.83, R) >droYak2.chr3R 17130912 112 + 28832112 GCGCCCUCCUUCAAUGGCACAUCCUGCAUUUGUCCUGUAGCCUGGUGUCGCCUUCGAUGCUCGCUAAUCCAUUACCAGCGUCAUUAAUCUAAUGAGCUGCUGCUGCUCGGCG .((((..........(((((((((((((.......)))))...))))).)))...((((((.(.(((....)))).))))))...........((((.......)))))))) ( -30.30, z-score = -1.01, R) >droEre2.scaffold_4770 9165339 112 - 17746568 GCGUCCUCCUUCAAUGGCACAUCCUGCAUUUGUCCUGUAGCCUGGUGUCGCCUUCGAUGCUCGCUAAUCCAUUACCAGCGUCAUUAAUCUAAUGAGCUGGUGCUGCUCGGCG (((((..........(((((((((((((.......)))))...))))).)))...))))).((((....((.(((((((.((((((...))))))))))))).))...)))) ( -34.82, z-score = -2.45, R) >droAna3.scaffold_13340 10260512 96 + 23697760 -----------CUGUACUCCACCGGGCAGU-GUCC----GUUUGGUGUCGCCUUCGUUGCUCGCUAAUCCAUUACCAACGUCAUUAAUCUAAUGAGCUGUUGCUGUUCGAUG -----------...........(((((((.-....----..((((((..((.......)).))))))........(((((((((((...))))))..))))))))))))... ( -18.60, z-score = 0.61, R) >consensus GUGUCCUCCUUCGAUGGCACAUCCUGCAUUUGUCCUGUAGCCUGGUGUCGCCUUCGAUGCUCGCUAAUCCAUUACCAGCGUCAUUAAUCUAAUGAGCUGGUGCUGCUCGGCG ................(((.....)))....(((..(((((..(((((((....)))))))............((((((.((((((...)))))))))))))))))..))). (-24.23 = -24.73 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:42 2011