| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,036,158 – 13,036,252 |
| Length | 94 |
| Max. P | 0.506656 |
| Location | 13,036,158 – 13,036,252 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 84.26 |
| Shannon entropy | 0.24768 |
| G+C content | 0.65816 |
| Mean single sequence MFE | -37.55 |
| Consensus MFE | -25.25 |
| Energy contribution | -25.88 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13036158 94 + 27905053 UAAGUGAGCUGCGCUGCUGCUACACAAAAGUGUGCGGUGGGCGGUGGGCGGCUGGGCCAGCAGUUGCGGCAGGGGGCGUGGCAGCGGGCAAAAU ...((..(((((.(..((((.((((....))))))))..))))))..))......(((.((.((..((.(....).))..)).)).)))..... ( -41.20, z-score = -1.15, R) >droSim1.chr3R 19079028 86 - 27517382 UAAGUGAGCUGCGCUGCUGCUUCACAAAAGUG-------GGCGGUGGGCUGCUGGGGCAGCAGU-GCGGCAGGGGGCGUGGCAGCGGGCAAAAU .......((((((((((((((((((....)).-------(((((....))))))))))))))))-))))).....((.((....)).))..... ( -40.60, z-score = -2.81, R) >droSec1.super_12 1003116 86 - 2123299 UAAGUGAGCUGCGCUGCUGCUUCACAAAAGUG-------GGCGGUGGGCGGUUGGGGCAGCAGU-GCGGCAGGGGGCGUGGCAGCGGGCAAAAU .......(((((((((((((((((((....))-------.((.....))...))))))))))))-))))).....((.((....)).))..... ( -36.10, z-score = -2.22, R) >droEre2.scaffold_4770 9154845 82 - 17746568 UAAGUGAGCUGCGCUGCUGCUCCGCAAAAGGG--------GCAGUGGGCGG--AGGGCGUUGGA--CGGUUGGGGGCGUGGCAGCGGGCGAAAU ...((..(((((.(..(((((((......)))--------))))..)((..--.((.((.....--)).))....))...)))))..))..... ( -32.30, z-score = -1.27, R) >consensus UAAGUGAGCUGCGCUGCUGCUUCACAAAAGUG_______GGCGGUGGGCGGCUGGGGCAGCAGU_GCGGCAGGGGGCGUGGCAGCGGGCAAAAU ...((..((((((((((((((((((....)))........((.....)).....)))))))))).(((.(....).))).)))))..))..... (-25.25 = -25.88 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:41 2011