| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,679,693 – 7,679,783 |
| Length | 90 |
| Max. P | 0.858532 |
| Location | 7,679,693 – 7,679,783 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 72.13 |
| Shannon entropy | 0.52312 |
| G+C content | 0.37511 |
| Mean single sequence MFE | -13.92 |
| Consensus MFE | -6.35 |
| Energy contribution | -6.35 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.858532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7679693 90 - 23011544 UUCUACGACCUUGCUUAUCUACUUCGCGAUAAGAUUAAAGUCCAAUCGAA---CCGAAAUCAGUUGAUGUCACCCAUUACCACUUCCAAAAAA--- ......((((((.((((((........))))))....)))..((((.((.---......)).))))..)))......................--- ( -10.00, z-score = -0.65, R) >droSim1.chr2L 7477030 90 - 22036055 UUCCACGACCUUGCUUAUCUACUUCAAGAUAAGAUUAAAGACCAAUCGAA---CCGAAAUCAGUUGAUGUCACCCAUUACCCAUUUCAAAAAA--- .....(((.(((.(((((((......)))))))....))).....)))..---..(((((..((.((((.....))))))..)))))......--- ( -12.60, z-score = -2.22, R) >droSec1.super_3 3193433 90 - 7220098 UUCCACGACCUUGCUUAUCUACUUCAAGAUAAGAUUAAAGACCAAUCGAA---CCGAAAUCAGUUGAUGUCACCCAUUAGCCAUUUCAAAAAA--- .....(((.(((.(((((((......)))))))....))).....)))..---..(((((..(((((((.....))))))).)))))......--- ( -16.20, z-score = -3.32, R) >droYak2.chr2L 17111892 93 + 22324452 UUCUACGACCUUGCUUAUCUACCUCAAGAUAAGAUUAAAGACCAAUAGAAUAGGCCAAAUCAGUUGAUGUCACCCAUUACCUAUUUCCCCAAA--- (((((....(((.(((((((......)))))))....))).....)))))..((..((((.((.(((((.....))))).))))))..))...--- ( -15.00, z-score = -2.33, R) >droEre2.scaffold_4929 16608385 90 - 26641161 UUCUACGACAUGGCUUAUCUACCUCAAGAUAAGAUUAAAGACCAAUAGAA---GCCAAAUCAGUUGAUGUCACCCAUUACCUAUUUUCCAAAC--- ......(((((..(((((((......))))))).........((((.((.---......)).)))))))))......................--- ( -13.60, z-score = -1.80, R) >droVir3.scaffold_13246 2194518 96 + 2672878 CGCUGCGACCUUGCUUAUCUAUAAUAACAUGAGACUCACCUGUGCCUAGGCAUUUUGAUAAGAUUGUGACUAAUGGCAGCCAAAAACAAAAAAAAA .(((((.......((((((..........((.....))...((((....))))...))))))((((....)))).)))))................ ( -16.10, z-score = -0.39, R) >consensus UUCUACGACCUUGCUUAUCUACUUCAAGAUAAGAUUAAAGACCAAUCGAA___CCGAAAUCAGUUGAUGUCACCCAUUACCAAUUUCAAAAAA___ ......(((....(((((((......))))))).........................(((....))))))......................... ( -6.35 = -6.35 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:15 2011