| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,022,604 – 13,022,657 |
| Length | 53 |
| Max. P | 0.740762 |
| Location | 13,022,604 – 13,022,657 |
|---|---|
| Length | 53 |
| Sequences | 9 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 71.81 |
| Shannon entropy | 0.50077 |
| G+C content | 0.44415 |
| Mean single sequence MFE | -18.80 |
| Consensus MFE | -4.98 |
| Energy contribution | -5.54 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13022604 53 + 27905053 ---GAGCCAGUCCAUUUUCGGUGGAACCCA-------------CUGAAAUUGGUAUUGGUAUCUGCAUA ---..(((((((((.(((((((((...)))-------------)))))).))).))))))......... ( -22.80, z-score = -4.45, R) >droSim1.chr3R 19065705 53 - 27517382 ---GAGCCAGUCCAUUUUCGGUGGAACCCA-------------CUGAAAUUGGUAUUGGUAUCUGCAUA ---..(((((((((.(((((((((...)))-------------)))))).))).))))))......... ( -22.80, z-score = -4.45, R) >droSec1.super_12 989542 53 - 2123299 ---GAGCCAGUCCAUUUUCGGUGGAACCAA-------------CUGAAAUUGGUAUUGGUAUCUGCAUA ---..(((((((((.((((((((....).)-------------)))))).))).))))))......... ( -18.70, z-score = -3.14, R) >droYak2.chr3R 17106877 51 + 28832112 -----GCCAGUCCAUUUUCGGUGGAACCCA-------------CUGAAAUUGGUAUUGGUAUCUGCAUA -----(((((((((.(((((((((...)))-------------)))))).))).))))))......... ( -22.50, z-score = -4.63, R) >droEre2.scaffold_4770 9141609 51 - 17746568 -----GCCAGUCCAUUUUCGGUGGAACCCA-------------CUGAAAUUGGUAUUGGUAUCUGCAUA -----(((((((((.(((((((((...)))-------------)))))).))).))))))......... ( -22.50, z-score = -4.63, R) >droAna3.scaffold_13340 10239286 51 + 23697760 -----ACUAGUCCCUUUUUGGGGUCUCCCA-------------CUGAAAUUGGUAUUGGUAUCUGCAUA -----((((((((..(((..(((....)).-------------)..)))..)).))))))......... ( -11.90, z-score = -0.56, R) >dp4.chr2 21396798 64 - 30794189 -----AACAGGCCAUUUUUGGGGGCAUCUGGCCGAAGCAAAAGCUGAAAUUGGUAUUGGUAUCUGCAUA -----.............((.((..(((..((((((((....)))....)))))...)))..)).)).. ( -13.10, z-score = 1.05, R) >droPer1.super_0 8617410 64 - 11822988 -----AACAGGCCAUUUUUGGGGACAUCUGGCCGAAGCAGAAGCUGAAAUUGGUAUUGGUAUCUGCAUA -----....(((((....((....))..)))))...(((((.((..(........)..)).)))))... ( -23.10, z-score = -3.08, R) >droMoj3.scaffold_6540 17536931 55 + 34148556 UAGAUGGCAUUGCACUUUUUGGUCAAUGC--------------CCGAAAUUGGCAUACGUACACAUAUG .....(((((((.(((....)))))))))--------------)......................... ( -11.80, z-score = -0.75, R) >consensus _____GCCAGUCCAUUUUCGGUGGAACCCA_____________CUGAAAUUGGUAUUGGUAUCUGCAUA .......(((((((.((((((......................)))))).))).))))........... ( -4.98 = -5.54 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:41 2011