| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,022,215 – 13,022,331 |
| Length | 116 |
| Max. P | 0.824757 |
| Location | 13,022,215 – 13,022,331 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 88.61 |
| Shannon entropy | 0.19510 |
| G+C content | 0.52595 |
| Mean single sequence MFE | -35.16 |
| Consensus MFE | -31.16 |
| Energy contribution | -32.74 |
| Covariance contribution | 1.58 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13022215 116 - 27905053 UGAAAUGUGCCAAAAACUGUCGGUGAACGAGUCCGGUGGUAGUCGGUGGUAGCCGAUGGAAGCCGGUGGAAGCCUGCAACUGACGUGAUAUCACCCAACCUCAAGUUUUUGAGCCG ......(.((((((((((((((((....(..((((.((((.((((((....))))))....)))).))))..).....))))))(((....))).........)))))))).))). ( -40.20, z-score = -1.99, R) >droSim1.chr3R 19065316 116 + 27517382 UGAAAUGUGCCAAAAACUGUCGGUGAACGAGUCAGGUGGUAGUCGGUGGUAGCCGAUGGAAGCCGGUGGAAGCCUGCAACUGACGUGAUAUCACCCAACCUCAAGUUUUUGAGCCG ......(.((((((((((...(((......(((((......((((((....))))))....((.(((....))).))..)))))(((....)))...)))...)))))))).))). ( -37.30, z-score = -1.26, R) >droSec1.super_12 989153 116 + 2123299 UGAAAUGUGCCAAAAACUGUCGGUGAACGAGUCCGGUGGUAGUCGGUGGUAGCCGAUGGAAGCCGGUGGAAGCCUGCCACUGACGUGAUAUCACCCAACCUCAAGUUUUUGAGCCG ......(.(((((((((((((((((.(.(..((((.((((.((((((....))))))....)))).))))..).)..)))))))(((....))).........)))))))).))). ( -42.30, z-score = -2.48, R) >droYak2.chr3R 17106491 106 - 28832112 UGAAAUGUGCCAAAAACUGUCGGUGAACGAGUCCGGUGGU----------AGCCAAUGGAAGCCAAUGGAAGCCUGCAACUGACGUGAUAUCACCCAACCUCAAGUUUUUGAGCCG ......(.((((((((((((((((....(..((((.((((----------..((...))..)))).))))..).....))))))(((....))).........)))))))).))). ( -32.10, z-score = -2.05, R) >droEre2.scaffold_4770 9141264 95 + 17746568 UGAAAUGUGCCAAAAACUGUCGGUAAACGAGUCCGGUGGC--------------------AGCCGGUGGAAGCCUGCAACUGACGUGAUAUCACCCAACCUCAAG-UUUUGAGCCG ......(.((..((((((((((((....(..((((.(((.--------------------..))).))))..).....))))))(((....))).........))-))))..))). ( -23.90, z-score = 0.15, R) >consensus UGAAAUGUGCCAAAAACUGUCGGUGAACGAGUCCGGUGGUAGUCGGUGGUAGCCGAUGGAAGCCGGUGGAAGCCUGCAACUGACGUGAUAUCACCCAACCUCAAGUUUUUGAGCCG ......(.((((((((((((((((....(..((((.((((.((((((....))))))....)))).))))..).....))))))(((....))).........)))))))).))). (-31.16 = -32.74 + 1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:40 2011