| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,003,158 – 13,003,261 |
| Length | 103 |
| Max. P | 0.578924 |
| Location | 13,003,158 – 13,003,261 |
|---|---|
| Length | 103 |
| Sequences | 9 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 59.66 |
| Shannon entropy | 0.80553 |
| G+C content | 0.40951 |
| Mean single sequence MFE | -19.05 |
| Consensus MFE | -6.88 |
| Energy contribution | -7.02 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.578924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13003158 103 - 27905053 ------UAAAAGCUGCAAAA-AAAUUACAUUCAAUUUGGCGGAAGCUACGCUACCCGAAAAAUACCUGCUCAAAGUU---GUAAGUUGUCAUUUGGCAGCACUUACACCUACG ------.....(((((....-((((.(((..(((((((((....)))..((................))...)))))---).....))).)))).)))))............. ( -20.79, z-score = -0.87, R) >droSim1.chr3R 19046251 103 + 27517382 ------UAAAAGCUGCAAAA-AAAUUACAUUCAAUUUGGCGGAAACUCUGCCACCCGAAAAAUACCUGCUCAAAGUU---GUAAGUUGUCAUUCGGCAGCGCUUACACCUACG ------.....(((((....-...............((((((.....))))))..((((....((.(((........---))).)).....)))))))))............. ( -23.70, z-score = -2.07, R) >droSec1.super_12 970158 104 + 2123299 ------UAAAAGCUGCAAAAUAAAUUACAUUCAAUUUGUCGGAAACUCCGCCACCCGAAAAAUACCUGUUCAAAGUU---GUAAGUUGUCAUUCGGCAGCGCAUACACCUACG ------.....(((((....................((.(((.....))).))..((((..(((.((...((....)---)..)).)))..)))))))))............. ( -18.10, z-score = -0.91, R) >droYak2.chr3R 17087277 103 - 28832112 ------UAGAAGCUGAGAAA-AACCUUCAUUUAAUUUGCCCAAAGCUCCUCCACCCGAAAUACUCCUGUUCAGAGUU---GUAAGUUGUCAUUUGGCAACGCUUACACCUACG ------......(((((((.-....))).........((.....)).......................))))((.(---((((((((((....))))..))))))).))... ( -15.10, z-score = 0.05, R) >droEre2.scaffold_4770 9122257 91 + 17746568 ------UAAAAGCUG-CUAA-AGCCUUCAUUUAAUUUGUCCCA-----------CAAAAAGAUACCAGCUCAGAGUU---GAAAGUUGUCUUUCGGCAACGCUUACACCUACG ------...((((.(-((..-(((....((((..((((.....-----------)))).))))....)))...))).---....((((((....))))))))))......... ( -14.30, z-score = -0.18, R) >droVir3.scaffold_13047 14103141 84 - 19223366 ---------------------AAACAACAGAAAAGUUUGCCCUAGUUA-----CUCAGGUAACAUCUUUGCAGAGUC---UGAUACCGUGCUUUGCACACAUGUACCAUAUUA ---------------------...........................-----....((((.(((.(.((((((((.---((....)).)))))))).).)))))))...... ( -16.60, z-score = -0.78, R) >droAna3.scaffold_13340 10220578 107 - 23697760 AACAUGCUGUUGGCGUGGAA-AACUACCAUUCAAUUUGACGGAACCUC-----CCCCGAAAAUACCUGCUCGAAGUUACAGGAAGUUGUCAUUCGGCAACACUUCCUCACACA ..(((((.....)))))...-...............(((.((((....-----...........((((..........))))..((((((....))))))..))))))).... ( -22.10, z-score = 0.03, R) >droPer1.super_0 8597434 101 + 11822988 ------AAACAACCAUAAA--ACACUAAAUUCUGGUGGCGUGAGAAAAU----CAUAUAAAAUACCUGCUCAACAUUGAAGGAAGUUGUCAUUCGGCAACACUUCCGAGCACA ------.............--.(((((.....)))))..((((.....)----)))..........(((((.........((((((((((....))))..))))))))))).. ( -20.40, z-score = -1.47, R) >dp4.chr2 21376841 101 + 30794189 ------AAACAACCAUAAA--ACACUAAAUUCUGGUGGCGUGAGAAAAU----CAUAUAAAAUACCUGCUCAACAUUGAAGGAAGUUGUCAUUCGGCAACACUUCCGAGCACA ------.............--.(((((.....)))))..((((.....)----)))..........(((((.........((((((((((....))))..))))))))))).. ( -20.40, z-score = -1.47, R) >consensus ______UAAAAGCUGCAAAA_AAACUACAUUCAAUUUGCCGGAAACUA_____CCCAAAAAAUACCUGCUCAAAGUU___GGAAGUUGUCAUUCGGCAACACUUACACCUACG ................................................................................((((((((((....))))..))))))....... ( -6.88 = -7.02 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:39 2011