| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,978,408 – 12,978,503 |
| Length | 95 |
| Max. P | 0.610392 |
| Location | 12,978,408 – 12,978,503 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 67.58 |
| Shannon entropy | 0.59140 |
| G+C content | 0.41272 |
| Mean single sequence MFE | -23.02 |
| Consensus MFE | -9.82 |
| Energy contribution | -13.18 |
| Covariance contribution | 3.36 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.610392 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12978408 95 - 27905053 CUUGGCUUGUUCCCUCUGAAAUAAUGAGUAAACUAGAGGUUUGCCUUCGGAUUUUCGGUAAUCUGCUCGUUUCCGGAUUUUGGAAGGCUUGGAAG .........(((((((((...............)))))....((((((.((..(((((.(((......))).)))))..)).))))))..)))). ( -25.46, z-score = -0.74, R) >droYak2.chr3R 17061984 94 - 28832112 AUUGGCUUGUUCCCUCCUAAAUAGUGAGAAAACUAGAGGAUUGCCUUCUGUUUCUCGGUAAUCUGUUGGAUUCCGGAGUUU-AUCCGUUUGGAAG .............((((........((((((..((((((.....))))))))))))((.((((.....))))))))))...-.(((....))).. ( -22.60, z-score = -0.53, R) >droSec1.super_12 946074 95 + 2123299 CUUGGCUUGUUCCCUCUGGAAUAAUGAGUAAACUAGAGGUUUGCCUUCUGAUUUUCGGUCAUCUGUUCGUUUCCGGAGUUUGGAAGGCUUGCAAC ....((......(((((((.............)))))))...((((((..(.((((((..((......))..)))))).)..))))))..))... ( -29.12, z-score = -2.05, R) >droSim1.chr3R_random 694440 95 - 1307089 CUUGGCUUGUUCCCUCUGGAAUAAUGAGUAAACUAGAGGUUUGCCUUCUGAUUUUCGGUAAUCUGUUCGUUUCCGGAGUUUGGAAGGCUUGCAAG .....(((((..(((((((.............)))))))...((((((..(.((((((.(((......))).)))))).)..))))))..))))) ( -31.32, z-score = -2.94, R) >dp4.chr2 21346303 83 + 30794189 AUUACAUUAUUCAACUCAAAGUAUUACGAUAAAC-CCUUUAUACGUUCUAAAUACUACAUAUACGU---AUGCCUAAGACUAGCAUG-------- ...................(((((((((((((..-...)))).)))....)))))).........(---((((.........)))))-------- ( -6.60, z-score = -0.07, R) >consensus CUUGGCUUGUUCCCUCUGAAAUAAUGAGUAAACUAGAGGUUUGCCUUCUGAUUUUCGGUAAUCUGUUCGUUUCCGGAGUUUGGAAGGCUUGCAAG ............((((((...............))))))...(((((((((.((((((..............)))))).)))))))))....... ( -9.82 = -13.18 + 3.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:37 2011