| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,951,419 – 12,951,492 |
| Length | 73 |
| Max. P | 0.565336 |
| Location | 12,951,419 – 12,951,492 |
|---|---|
| Length | 73 |
| Sequences | 8 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 66.54 |
| Shannon entropy | 0.67679 |
| G+C content | 0.50170 |
| Mean single sequence MFE | -20.04 |
| Consensus MFE | -7.82 |
| Energy contribution | -8.78 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565336 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12951419 73 - 27905053 UUAUUUUAAUGUUUCUGGAGGCAAGUGAUAUUCUUGGCCCACAGCCAGGAGUCCGUUCAGUCGGACAGCCGGA ...................(((.........(((((((.....)))))))(((((......))))).)))... ( -24.00, z-score = -2.17, R) >droPer1.super_19 684311 64 - 1869541 ---------UUUUCCUGGAUGCAAUGGACAAAGUUGGCUCAUGGCCAGACGCCAAGGGAGACAGGCAGACAGG ---------....((((..(((..(((......(((((.....)))))...)))..(....)..)))..)))) ( -22.00, z-score = -2.26, R) >dp4.chr2 4979331 64 - 30794189 ---------UUUUCCUGGAUGUAAUGGACAAAGUUGGCUCAUGGCGAGACACCAAGGGAGACAGGCAGACAGG ---------....((((..(((...........(((((((.....)))...)))).(....)..)))..)))) ( -14.80, z-score = -0.44, R) >droAna3.scaffold_13340 17169779 72 + 23697760 UCAAUUUAAUUGCUCCAGGAAAACAAGAAAUUCUUGGAUCUUGGCCAAGAGACCGGGCAGACAGACAGACUA- .........((((.((((((...((((.....))))..))))))((........))))))............- ( -14.70, z-score = -0.63, R) >droEre2.scaffold_4770 9070217 73 + 17746568 UUGUUUUAAUGCUCCUGGAGGAAAAUGAUAUUCUUGGCCCCCAGCCAGGAGGCAGCUCAAACAGACAACCGGA ((((((...((((((....)))........((((((((.....)))))))))))....))))))......... ( -18.80, z-score = -0.12, R) >droYak2.chr3R 17400396 73 + 28832112 UUAUUUCGAUGUUCCUGGAGGCAUAUGAUAUUCUUGGCCCCCAGCCAGGAGGUCGUUCAGACAGACAGCCGGA ....((((.((((.((((((((........((((((((.....))))))))))).)))))...))))..)))) ( -19.70, z-score = -0.19, R) >droSec1.super_12 919195 73 + 2123299 UUAUUUUGAUGUUUCUGGAGGCAAGUGAUAUUCUUGGCCCACAGCCAGGAGGCCGUUCAGACGGACAGCCGGA .............(((((((((.(....).((((((((.....))))))))))).))))))(((....))).. ( -22.90, z-score = -1.21, R) >droSim1.chr3R 18999409 73 + 27517382 UUAUUUUAAUGUUUCUGGAGGCAAGUGAUAUUCUUGGCCCACAGCCAGGAGUCCUCUCAGACGGACAGCCGGA .............((((((((........(((((((((.....))))))))))))).))))(((....))).. ( -23.40, z-score = -1.65, R) >consensus UUAUUUUAAUGUUCCUGGAGGCAAAUGAUAUUCUUGGCCCACAGCCAGGAGGCCGGUCAGACAGACAGCCGGA .............((((.............((((((((.....))))))))..........))))........ ( -7.82 = -8.78 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:35 2011