Locus 10310

Sequence ID	dm3.chr3R
Location	12,892,941 – 12,893,032
Length	91
Max. P	0.645338

overview

Window 9

Location	12,892,941 – 12,893,032
Length	91
Sequences	4
Columns	91
Reading direction	forward
Mean pairwise identity	91.18
Shannon entropy	0.14410
G+C content	0.50402
Mean single sequence MFE	-25.18
Consensus MFE	-21.55
Energy contribution	-21.80
Covariance contribution	0.25
Combinations/Pair	1.00
Mean z-score	-1.57
Structure conservation index	0.86
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.33
SVM RNA-class probability	0.645338
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 12892941 91 + 27905053
UUUUCCUCGAUUUUCCGCUGAAUCGCUGAGCGAUUGUGUAGAUUAUGUGUGCCGCCCAAUGCGCACAGCACAUUUCUCGAAUCGGCUCUGG
........(((((......)))))(((((.(((.(((((......(((((((........))))))))))))....)))..)))))..... ( -24.60, z-score =  -0.61, R)
>droEre2.scaffold_4770 9009414 89 - 17746568
UUUUCCUCGAUUUUCCUCUGAAUCGCUGAGCGAUUGU--AGAUUGUGUGUGCCGCCCAAUGCGCACAGCACAUUUCUCGAAUCGGCUUCGG
.......((((((......))))))((((((((((..--(((.(((((((((.((.....))))))).))))..)))..)))).)).)))) ( -26.00, z-score =  -1.48, R)
>droYak2.chr3R 17341648 89 - 28832112
UUUCCCUCGAUUUUCCUCUGAAUCGCCGAGCGAUUGU--AGAUUGUGUGUGCCGCCCAAUGCGCACAGCACAUUUCUCGAAUCGGCUUUGG
....((..(((((......)))))(((((....(((.--(((.(((((((((.((.....))))))).))))..)))))).)))))...)) ( -27.60, z-score =  -2.24, R)
>droSec1.super_12 860302 84 - 2123299
UUUUCCUCGAUUUUCCUCUGAAUCGCUCAGCGAUUGUGUAGAUUGUGUGUGCCGCCCAAUGCGCACAGCACAUUUCUCGAAUCG-------
.......((((((.......((((((...))))))..(.(((.(((((((((.((.....))))))).))))..))))))))))------- ( -22.50, z-score =  -1.94, R)
>consensus
UUUUCCUCGAUUUUCCUCUGAAUCGCUGAGCGAUUGU__AGAUUGUGUGUGCCGCCCAAUGCGCACAGCACAUUUCUCGAAUCGGCUUUGG
.......((((((.......((((((...))))))....(((.(((((((((.((.....))))))).))))..))).))))))....... (-21.55 = -21.80 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:31 2011