| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,672,198 – 7,672,296 |
| Length | 98 |
| Max. P | 0.948552 |
| Location | 7,672,198 – 7,672,296 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 89.83 |
| Shannon entropy | 0.19084 |
| G+C content | 0.46729 |
| Mean single sequence MFE | -25.35 |
| Consensus MFE | -19.43 |
| Energy contribution | -20.35 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948552 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7672198 98 + 23011544 GGUAAAGGUCAAUCCCUGACCUUUCCCGCGAGC----CCAUAAAUAUUAUGACUGC-CCUAGUCGAUAAUCUCUUCAAAGUUUUCGUCGCUCGCUGGACUUUU ((.((((((((.....)))))))).))((((((----.............(((((.-..)))))(((.....((....)).....)))))))))......... ( -27.70, z-score = -3.64, R) >droSec1.super_3 3186290 98 + 7220098 GGCAAAGGUCAACCCCUGACCUUUCCCGCGAGC----CCAUAAAUAUUUUUACUGC-CCUAGUCGAUAAUCUCUUCAAAGUUUCCGUCGCUCGCUGGACUUUU ((.((((((((.....)))))))).))((((((----...((((....))))....-....(.((..((.((......))))..)).)))))))......... ( -23.50, z-score = -2.48, R) >droSim1.chr2L 7469790 98 + 22036055 GGCAAAGGUCAACCCCUGACCUUUCCCGCGAGC----CCAUAAAUAUUAUGACUGC-CCUAGUCGAUAAUCUCUUCAAAGUUUCCGUCGCUCGCUGGACUUUU ((.((((((((.....)))))))).))((((((----.............(((((.-..)))))(((.....((....)).....)))))))))......... ( -27.70, z-score = -3.59, R) >droYak2.chr2L 17104409 98 - 22324452 GGCAAAGGUCAAACCCUGACCUUUCCAGCGAGC----CCAUAAAUAUUAUGUCUGC-CCUAGUCGAUAAUCUCUUCAAACUUUCCGUCGCUCGCUGGACUUUU ....(((((((.....)))))))((((((((((----............((((.((-....)).))))..........((.....)).))))))))))..... ( -28.20, z-score = -4.22, R) >droEre2.scaffold_4929 16601142 98 + 26641161 GGCAAAGGUCAAACCCUGACCUUUCCGGCAAGC----CCAUAAAUAUUAUUACUGC-CCUAGUCGAUAAUCUCUUCAAAGUUUUCGUCGCUCGCUGGUCCUUU ((.((((((((.....))))))))))((((...----................)))-)(((((((((.....((....)).....))))...)))))...... ( -21.01, z-score = -1.62, R) >droAna3.scaffold_12916 15620645 103 + 16180835 GGCAAAGGUCAAGCCUUGACCUUUUUCGUGUGGGUGGCCAUAAAUAUUAUGACUGGGCCGAGUCGAUAAUCUCUUCAAACUUUUAGUCGCUAGCUGGACUUUU ((.((((((((.....)))))))).))((.(((.((((..((((......((((......))))((........)).....))))...)))).))).)).... ( -24.00, z-score = 0.33, R) >consensus GGCAAAGGUCAAACCCUGACCUUUCCCGCGAGC____CCAUAAAUAUUAUGACUGC_CCUAGUCGAUAAUCUCUUCAAAGUUUCCGUCGCUCGCUGGACUUUU ((.((((((((.....)))))))))).((((((.................(((((....)))))((........))............))))))......... (-19.43 = -20.35 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:14 2011