| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,886,656 – 12,886,764 |
| Length | 108 |
| Max. P | 0.500000 |
| Location | 12,886,656 – 12,886,764 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 89.69 |
| Shannon entropy | 0.17806 |
| G+C content | 0.48848 |
| Mean single sequence MFE | -36.10 |
| Consensus MFE | -23.68 |
| Energy contribution | -22.80 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 12886656 108 - 27905053 GCGAUCCAUGUGGCCAUACAG----UUGUAAGCUCGGCCGAGUGAUACGCACGUUCUAGAUAACGUUCAAUGUGGCCAGUAAAUCUGUUGCCCGGGCAACUGGGUUAUAAAU ..(((..((.((((((((...----..(((.((((....))))..)))(.(((((......))))).)..))))))))))..)))(((.((((((....)))))).)))... ( -35.50, z-score = -1.64, R) >droSim1.chr3R 18932794 108 + 27517382 GCGAUCCAUGCGGCCAUACAG----UUGUAAGCUCGGCCGAGUGAUACGCACGUUCUAGAUAACGUUCAGUGUGGCCAGUAAAUCUGUUGCCCGGGCAACUGGGUUAUAAAU ..(((...(((((((((((..----..(((.((((....))))..)))(.(((((......))))).).)))))))).))).)))(((.((((((....)))))).)))... ( -39.30, z-score = -2.38, R) >droSec1.super_12 854152 108 + 2123299 GCGAUCCAUGCGGCCAUACAG----UUGUAAGCUCGGCCGAGUGAUACGCACGUUCUAGAUAACGUUCAGUGUGGCCAGUAAAUCUGUUGCCCGGGCAACUGGGUUAUAAAU ..(((...(((((((((((..----..(((.((((....))))..)))(.(((((......))))).).)))))))).))).)))(((.((((((....)))))).)))... ( -39.30, z-score = -2.38, R) >droYak2.chr3R 17335251 111 + 28832112 ACGAUCCAUGUGCCCAUACAGUUAGUUGUAAGCUCGGCCGAGUGAUACGCACGUUCUAGAUAACGUUCAAUGUGCCCAGUAAAUCUGUUGGCC-GGCAAAUGGGUUAUAAAU ..(((((((.((((..(((((....))))).....((((((.......(((((((...((......))))))))).(((.....)))))))))-)))).)))))))...... ( -34.90, z-score = -2.28, R) >droEre2.scaffold_4770 9002633 95 + 17746568 GCGAUCCAUGUGCCCAUACAG----UUGUAAGCUCGGCCGAGUGAUACGCACGUUCUAGAUAACGUUCAA-------------UCUGUUGGUCGGGCAAAUGGGUUAUAAAU ..(((((((.(((((.(((..----..))).....((((((..(((..(.(((((......))))).).)-------------))..))))))))))).)))))))...... ( -31.50, z-score = -2.33, R) >consensus GCGAUCCAUGUGGCCAUACAG____UUGUAAGCUCGGCCGAGUGAUACGCACGUUCUAGAUAACGUUCAAUGUGGCCAGUAAAUCUGUUGCCCGGGCAACUGGGUUAUAAAU ..((((((((((((...((((......(((.((((....))))..)))(.(((((......))))).)................)))).)))...)))..))))))...... (-23.68 = -22.80 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:27 2011