| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,885,309 – 12,885,422 |
| Length | 113 |
| Max. P | 0.850430 |
| Location | 12,885,309 – 12,885,422 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 58.04 |
| Shannon entropy | 0.69225 |
| G+C content | 0.33257 |
| Mean single sequence MFE | -20.42 |
| Consensus MFE | -11.02 |
| Energy contribution | -10.50 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.54 |
| Mean z-score | -0.65 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12885309 113 - 27905053 AUUAGCAGCGCAGUUAACAGCAUUCAAAUAACUCAAUCGUGUUUAAAAUUGGUCUUUUGAGACUGAAAAGAUAGCAAAUGCAUUGGACAGCGA-UGGUAAUUGUGGUUCAGUUA----- ....(((..((.(((..(((..((((((..((.((((..........))))))..)))))).)))....))).))...)))(((((((.((((-(....))))).)))))))..----- ( -23.30, z-score = 0.10, R) >droEre2.scaffold_4770 9001357 107 + 17746568 ------------UGUAGUUUACUGUAGUUUACAAAAUCAUUUUUAAAGUUUGUUUAUUAAGACUGAAGAUAUAGCAAAUGCAUUGGAUGGGCACUGGUGAUUAAACUGUGGAUUUGUUA ------------.........(..(((((((.....((((((.....(((((((((((.........)))).))))))).....)))))).((....))..)))))))..)........ ( -16.30, z-score = 1.05, R) >droYak2.chr3R 17333985 100 + 28832112 ------------AAUAUUCCAUUCAAG-UAACAAAAUCAUUUUUGAAGUUUGUUUAUUGAAACCAAAG-----GCAAAUGCAUUGAAGAGGGA-UGGUAAUUAAACUACGAAUUUCUUU ------------..((((((.((((((-(..(((((....)))))..((((((((.(((....)))))-----)))))))).)))))..))))-))....................... ( -17.20, z-score = -0.72, R) >droSec1.super_12 852841 86 + 2123299 ---------------------------AUUAACAGCGCAUGUUCAAAAUUGGUCUUUUGGAACUGAAAACCUAGCAAAUGCAUUGGACAGCGA-UGUUAAUUGUGGUUUUGUAA----- ---------------------------(((((((.(((.(((((((....(((.((((......)))))))..((....)).)))))))))).-))))))).............----- ( -20.90, z-score = -1.22, R) >droSim1.chr3R 18931504 86 + 27517382 ---------------------------AUUAACAGCGCAUGUUCAAAAUUGGUCUUUUGAGACUGAAAACCUAGCAAAUGCAUUGGACAGCGA-UGUUAAUUGUGGUUUUGUUA----- ---------------------------(((((((.(((.(((((((..(..((((....))))..).......((....)).)))))))))).-))))))).............----- ( -24.40, z-score = -2.45, R) >consensus ______________UA______U__A_AUUACAAAAUCAUGUUUAAAAUUGGUCUUUUGAGACUGAAAACAUAGCAAAUGCAUUGGACAGCGA_UGGUAAUUGUGGUUUGGUUA_____ ............................((((((..((.(((((((..(((((((....))))))).......((....)).)))))))))...))))))................... (-11.02 = -10.50 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:26 2011