| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,880,031 – 12,880,220 |
| Length | 189 |
| Max. P | 0.629413 |
| Location | 12,880,031 – 12,880,220 |
|---|---|
| Length | 189 |
| Sequences | 5 |
| Columns | 198 |
| Reading direction | reverse |
| Mean pairwise identity | 92.52 |
| Shannon entropy | 0.13104 |
| G+C content | 0.39023 |
| Mean single sequence MFE | -31.62 |
| Consensus MFE | -25.55 |
| Energy contribution | -25.87 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12880031 189 - 27905053 GCUCUUUCUUUGCACACACAAACACAAACAAAUGCAUAGAAUUCAUAACAGCAAGCAGC-AAAAAUAAAAGAUUUUCGCCUGACGAUUUCCAAUCCCCUUCGAUUCUCACUUCAAUUGAUUUGCCUGCUGCACUCACACUUUUUCUAUGUAUUUCCUCCUUCACAUUUCAGUUCUAGAGCGCACAACAAC-------- (((((...((((......)))).......((((((((((((.........(((.(((((-(((.......((...(((.....)))..)).........((((((........)))))))))).)))))))...........)))))))))))).....................)))))..........-------- ( -32.75, z-score = -2.56, R) >droEre2.scaffold_4770 8996143 193 + 17746568 ----UCUCUUUGCACACACAAACACAAACAAAUGCAUAGAAUUCAUAACAGCAAGUAGC-AAAAACAAAAGAUUUUCGCCUGACGAUUUCCAAUCCCCUUCGAUUUUCACUUCAAUUGAUUUGCCUGCUGCACUCACACUUUUUCUGUGUAUUUCCUCCUUCACAUUUCAGUUCUAGAGCGCACAAAACUACAACAAC ----......(((................((((((((((((.........(((.(((((-(((.......((...(((.....)))..)).........((((((........)))))))))).)))))))...........))))))))))))................(((....))))))............... ( -27.85, z-score = -0.86, R) >droYak2.chr3R 17328617 190 + 28832112 GCUCUUUCUUGGCACACACAAACACAAACAAAUGCAUAGAAUUCAUAACAGCAAGCAGCAAAAAACAAAAGAUUUUCGCCUGACGAUUUCCAAUCCCCUUCGAUUUUCACUUCAAUUGAUUUGCCUGCUGCACUCACACUUUUUCUUUGUAUUUCCUCCUUCACAUUUCUGUUCUAGAGCGCACAACAAC-------- (((((.....((((...............(((((((.((((.........(((.((((((((........((...(((.....)))..)).........((((((........)))))))))).)))))))...........)))).)))))))...............))))..)))))..........-------- ( -29.66, z-score = -1.06, R) >droSec1.super_12 847575 182 + 2123299 GCUCUUUCUUUGCACACACAAGCACAAACAAAUGCAUAGAAUUCAUAACAGCAAGCAGC-AAAAAUAAAAGAUUUUCGCCUAACGAUUUCCAAUCCCCUUCGA-------UUCAAUUGAUUUGCCUGCUGCACUCACACUUUUUCUAUGUAUUUCCUUCUUCACAUUUCAGUUCUAGAGCGCACAACAAC-------- (((((.....(((........))).....((((((((((((.......(((((.(((((-.(((((.....))))).))....(((((...((((......))-------)).)))))...))).)))))............)))))))))))).....................)))))..........-------- ( -33.21, z-score = -2.68, R) >droSim1.chr3R 18925314 189 + 27517382 GCUCUUUCUUUGCACACACAAGCACAAACAAAUGCAUAGAAUUCAUAACAGCAAGCAGC-AAAAAUAAAAGAUUUUCGCCUGACGAUUUCCAAUCCCCUUCGAUUCGCACUUCAAUUGAUUUGCCUGCUGCACUCACACUUUUUCUAUGUAUUUCCUUCUUCACAUUUCAGUUCUAGAGCGCACAACAAC-------- (((((.....(((........))).....((((((((((((.........(((.(((((-(((.......((...(((.....)))..)).........((((((........)))))))))).)))))))...........)))))))))))).....................)))))..........-------- ( -34.65, z-score = -2.15, R) >consensus GCUCUUUCUUUGCACACACAAACACAAACAAAUGCAUAGAAUUCAUAACAGCAAGCAGC_AAAAAUAAAAGAUUUUCGCCUGACGAUUUCCAAUCCCCUUCGAUUCUCACUUCAAUUGAUUUGCCUGCUGCACUCACACUUUUUCUAUGUAUUUCCUCCUUCACAUUUCAGUUCUAGAGCGCACAACAAC________ ...........((................((((((((((((.......(((((.((((............((...(((.....)))..)).........((((((........)))))).)))).)))))............))))))))))))................(((....)))))................ (-25.55 = -25.87 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:23 2011