| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,875,337 – 12,875,452 |
| Length | 115 |
| Max. P | 0.779668 |
| Location | 12,875,337 – 12,875,452 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 64.84 |
| Shannon entropy | 0.66525 |
| G+C content | 0.45573 |
| Mean single sequence MFE | -27.39 |
| Consensus MFE | -13.73 |
| Energy contribution | -13.68 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.779668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12875337 115 + 27905053 -GGUUCGUUGGCGGCAGGAGGGGAUCGUCUUCAAUACGCUUCUACCAGGGAACCCAUUAAUGUAAUGUGCUGAUUUAACUGAUCCUGACAUACACACAGCCAAUGUACUAUGAAUC -(((.(((((((((.(((((.(..............).))))).)).((....)).....((((.(((.(.((((.....))))..))))))))....))))))).)))....... ( -28.54, z-score = -0.10, R) >droSim1.chr3R 18920260 102 - 27517382 -GGUUCGCUGGCGGCAGGAGGGGAUCGCCUUCAAUACGCUUCUACCAGGGAACCCAUUAAUGUAAUGUGCUGAUUUAACUGAUCCUGACAUACACGCAUACAA------------- -(((((.((((.(((..(((((.....))))).....)))....)))).))))).....((((..(((((.((((.....))))..).))))...))))....------------- ( -27.20, z-score = -0.54, R) >droSec1.super_12 842859 102 - 2123299 -GAUUCUCUGGCGGCGGGAGGGAAUCGCCUUCAAUACGCUUCUACCAGGGAACCCAUUAAUGUAAUGUGCUGAUUUAACUGAUCCUGACAUACAGGCAUACAA------------- -..((((((((.((((.(((((.....)))))....))))....)))))))).............(((((.((((.....))))(((.....))))))))...------------- ( -28.50, z-score = -1.40, R) >droYak2.chr3R 17323833 111 - 28832112 -GGUUCGUUAGCGGCAGGAGGGGAUCAUCUUCAAUACGCUUUUACCAGGGCGCCCAUCCAUGUAAUGUGCGGAUUUAACUGAUCCUUACAUACACACAUAUGUCUACGAAUU---- -.((((((....((((((((((((......))....(((((......)))))))).))).((((.((((.(((((.....))))).))))))))......)))).)))))).---- ( -32.50, z-score = -2.17, R) >droEre2.scaffold_4770 8991444 114 - 17746568 -GGUUCGUUGGCGGCAGGAGGGGAUCAUCUUCAAUACGCUUUUACCAGGGAGCCCAGCGAUGUAUUGUGCGGAUUUCAAUGAUCCUGACAUACACACAUGCAUGUACUAGCAAUU- -(((((.((((.(((..(((((.....))))).....)))....)))).)))))..((...((((.(((((((((.....)))))((.....)).....))))))))..))....- ( -29.50, z-score = 0.12, R) >droAna3.scaffold_13340 16671152 89 - 23697760 CGUUCUAAUGGGGAUGGGCAAAUGGCUUAUUUUAUA-AUUUCUAC-AUAGAACUGUGCCUCGCUUGAUCCU--UUCAUUAAGUCUUUAGACUU----------------------- .....((((((((((((((....(((...((((((.-........-))))))....)))..)))).)))))--..)))))((((....)))).----------------------- ( -18.10, z-score = -0.77, R) >consensus _GGUUCGUUGGCGGCAGGAGGGGAUCGUCUUCAAUACGCUUCUACCAGGGAACCCAUCAAUGUAAUGUGCUGAUUUAACUGAUCCUGACAUACACACAUACAA_____________ .(((((.((((.(((..(((((.....))))).....)))....)))).)))))......((((.(((...((((.....))))...)))))))...................... (-13.73 = -13.68 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:21 2011