| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,670,149 – 7,670,246 |
| Length | 97 |
| Max. P | 0.627456 |
| Location | 7,670,149 – 7,670,246 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 90.24 |
| Shannon entropy | 0.17900 |
| G+C content | 0.51974 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -21.43 |
| Energy contribution | -23.27 |
| Covariance contribution | 1.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7670149 97 + 23011544 ACAACAAAAGCAGAAAAAACUGC------GACAGGAGCAGCAGCCGCACGUCGUAAUAAUGUCGUCAAAGUGCGGCUCACCUGCUAAACUCAGCCGUUGCCAC .((((....((((......))))------((....(((((.((((((((..((.........)).....))))))))...)))))....))....)))).... ( -31.30, z-score = -2.59, R) >droSim1.chr2L 7467878 97 + 22036055 ACAACAAAAGCAGAAAAAACUGC------GACAGGAGGAGCAGCCGCACGUCGUAAUAAUGUCGUCAAAGUGCGGCUCACCUGCUAAACUCAGCCAUUGCCAC .........((((......))))------....(((((.(.((((((((..((.........)).....))))))))).)))(((......))).....)).. ( -27.00, z-score = -1.48, R) >droSec1.super_3 3184419 97 + 7220098 ACAACAAAAGCAGAAAAAACUGC------GACAGGAGCAGCAGCCGCACGUCGUAAUAAUGUCGUCAAAGUGCGGCUCACCUGCUAAACUCAGCCGUUGCCAC .((((....((((......))))------((....(((((.((((((((..((.........)).....))))))))...)))))....))....)))).... ( -31.30, z-score = -2.59, R) >droYak2.chr2L 17102314 97 - 22324452 ACAACAAUGGCAGCAAAAACUGC------GACAGGAGCAGCAGCCGCACGUCGUAAUAAUGUCGUCAAAGUGCGGCUCACCUGCUAAACUCAGCCGUUGCCAC ....(((((((.(((.....)))------((....(((((.((((((((..((.........)).....))))))))...)))))....)).))))))).... ( -35.60, z-score = -3.04, R) >droEre2.scaffold_4929 16599209 97 + 26641161 ACAACAAAAGCAGCAAAAACUGC------GACGGGAGCAGCAGCCGCACGUCGUAAUAAUGUCGUCAAAGUGCGGCUCACCUGCUAAACUCAGCCGUUGCCAC .((((....((((......))))------...((((((((.((((((((..((.........)).....))))))))...)))))...)))....)))).... ( -31.40, z-score = -1.84, R) >droAna3.scaffold_12916 15618433 98 + 16180835 GAUACAAAGGCAACAAAAACAGCAUCGGCGACAGGAACACCCGCCGCACAUCGUAAUAAUGUCGUCAAAGUGCGGCUCACCUGCGAAACUCAGCCAUU----- ........(((..........(((..((.((..((.....))(((((((..((.........)).....))))))))).)))))(.....).)))...----- ( -24.00, z-score = -1.27, R) >consensus ACAACAAAAGCAGAAAAAACUGC______GACAGGAGCAGCAGCCGCACGUCGUAAUAAUGUCGUCAAAGUGCGGCUCACCUGCUAAACUCAGCCGUUGCCAC .((((....((((......))))......((....(((((.((((((((..((.........)).....))))))))...)))))....))....)))).... (-21.43 = -23.27 + 1.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:13 2011