| Sequence ID | dm3.chr2L |
|---|---|
| Location | 744,073 – 744,182 |
| Length | 109 |
| Max. P | 0.633221 |
| Location | 744,073 – 744,182 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 70.46 |
| Shannon entropy | 0.51335 |
| G+C content | 0.47211 |
| Mean single sequence MFE | -29.90 |
| Consensus MFE | -15.58 |
| Energy contribution | -15.82 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 744073 109 + 23011544 --------GAUGACCUACUGAACCUUGCUAACUAAAUGUAUUCCCAAGCUGGAAACAUUGCUCCUUAGCUUCCUACACGGAAGGGAAUAGGUUUUUGG-ACGUGCAGGGAUCGGGAAG --------.........((((.((((((...(.((((.(((((((..((((((........)))..)))((((.....))))))))))).))))..).-....)))))).)))).... ( -34.80, z-score = -2.63, R) >droSim1.chr2L 746081 98 + 22036055 --------GAUGACCUACUGAACUUUGCUAACUAAA------------CUGGAAACAUUCCUCCUUAGCUUCCUACACGGAAGUGAAUGGGUUUCUGGGACGUGUGGGGAUCGGGUAG --------....((((..........(((((.....------------.((....)).......)))))((((((((((.....(((.....))).....))))))))))..)))).. ( -26.62, z-score = -0.83, R) >droSec1.super_14 715771 110 + 2068291 --------GAUGACCUACUGAACCUUGCUAACUAAAUGUAUUCCCAAACUGGAAACAUUCCUCCUUAGCUUCCUACGCGGAAGUAAAUGGGUUUUUGGGACGUGUGGGGAUCGGGAAG --------.........((((.(((..(..((.....))..(((((((.((....))...(((.((.((((((.....)))))).)).)))..)))))))...)..))).)))).... ( -32.00, z-score = -1.58, R) >droYak2.chr2L 727184 113 + 22324452 AAUGACCUGGGAACGGAACUA-CCUUACUAAUUAAAUGUGUUCCCCAACUGGAGACAUUU---UUUAGCACCCCACACGGAAGUAAAAAGGUUUUUGG-ACGUGUAGGGAUCGGAAAG ......(((....))).....-((...((((..((((((.((((......))))))))))---.))))..(((.(((((....(((((....))))).-.))))).)))...)).... ( -25.70, z-score = 0.43, R) >droEre2.scaffold_4929 798674 95 + 26641161 ----------------AAUGA-CCCGGGCAAGGAACUGC-UUCCGAAACUGGAAACAUUA---UUAAGUUUCCAACACGGAAGUGAAGAGGUGCU-GG-ACGUGUGGGGAUCGGGCAG ----------------..((.-((((((((......)))-((((.....(((((((....---....)))))))(((((..(((........)))-..-.))))).))))))))))). ( -30.40, z-score = -1.66, R) >consensus ________GAUGACCUACUGAACCUUGCUAACUAAAUGU_UUCCCAAACUGGAAACAUUCCUCCUUAGCUUCCUACACGGAAGUGAAUAGGUUUUUGG_ACGUGUGGGGAUCGGGAAG ......................((.........................((....))..........(.((((((((((.....(((.....))).....)))))))))).))).... (-15.58 = -15.82 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:43 2011