| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,794,495 – 12,794,581 |
| Length | 86 |
| Max. P | 0.556638 |
| Location | 12,794,495 – 12,794,581 |
|---|---|
| Length | 86 |
| Sequences | 5 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 95.34 |
| Shannon entropy | 0.08225 |
| G+C content | 0.46030 |
| Mean single sequence MFE | -17.42 |
| Consensus MFE | -16.82 |
| Energy contribution | -16.58 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12794495 86 - 27905053 CUUUAUUUCCAUUUGAGACUCCGCAAAUCUUUACGAUCUAGCAUCAACAUUAAAGGGACGACCUUGGCCCAAAUGCGGCCUCGUCG .......(((.(((((......((..(((.....)))...)).......))))).)))((((...(((((....).))))..)))) ( -17.32, z-score = -0.85, R) >droSim1.chr3R 18838619 86 + 27517382 CUUUAUUUCCAUUUGAGACUCCGCAAAUCUUUACGAUCUAGCAUCAACAUUAAAAGGACGACCUUGGCCCAAAUGCGGCCUCGUCG .......(((.(((((......((..(((.....)))...)).......))))).)))((((...(((((....).))))..)))) ( -17.32, z-score = -1.36, R) >droSec1.super_12 762462 86 + 2123299 CUUUAUUUCCAUUUGAGACUCCGCAAAUCUUUACGAUCUAGCAUCAACAUUAAAAGGACGACCUUGGCCCAAAUGCGGCCUCGUCG .......(((.(((((......((..(((.....)))...)).......))))).)))((((...(((((....).))))..)))) ( -17.32, z-score = -1.36, R) >droYak2.chr3R 17239821 85 + 28832112 CUUCAUUUCCAUUCGAGACUCGGCAAAUCUUUACGAUCUAGCAUUAACAUUAAA-GGGCGACCUUGGCCCAAAUGCGGCCUCGUCG ................(((..(((..(((.....)))...(((((.......((-((....))))......))))).)))..))). ( -18.52, z-score = -0.73, R) >droEre2.scaffold_4770 8908927 85 + 17746568 CUUUAUUUCCAUUUGAGACUCGGCAAAUCUUUACGAUCUAGCAUUAACAUUGAA-GGACGACCUUGGCCCAAAUGCGGCUUCGUCG (((((..........(((.(((...........))))))...........))))-)(((((....(((((....).))))))))). ( -16.60, z-score = -0.40, R) >consensus CUUUAUUUCCAUUUGAGACUCCGCAAAUCUUUACGAUCUAGCAUCAACAUUAAA_GGACGACCUUGGCCCAAAUGCGGCCUCGUCG .......(((.(((((......((..(((.....)))...)).......))))).)))((((...(((((....).))))..)))) (-16.82 = -16.58 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:16 2011