| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,786,163 – 12,786,253 |
| Length | 90 |
| Max. P | 0.758800 |
| Location | 12,786,163 – 12,786,253 |
|---|---|
| Length | 90 |
| Sequences | 9 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 71.56 |
| Shannon entropy | 0.55574 |
| G+C content | 0.41456 |
| Mean single sequence MFE | -19.86 |
| Consensus MFE | -6.11 |
| Energy contribution | -6.26 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.83 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.758800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12786163 90 + 27905053 ----UGCAACUGUAUUCGUACACGU-UUUGUAUCUGUAUCUGCU-GGUGCGCCUGCCAUGUGUAUCUUUUUGCUGUUGUGUAUCUCUAAAAUAAAA---- ----.(((((.(((...((((((((-...(((..((((((....-))))))..))).)))))))).....))).))))).................---- ( -21.30, z-score = -3.12, R) >droSim1.chr3R 18830313 90 - 27517382 ----UGCAACUGUAUUCGUACACGU-UUUGUAUCUGUAUCUGCU-GGUGCGCCUGCCAUGUGUAUCUUUUUGCUGUUGUGUAUCCCUAAAAUAAAA---- ----.(((((.(((...((((((((-...(((..((((((....-))))))..))).)))))))).....))).))))).................---- ( -21.30, z-score = -3.06, R) >droSec1.super_12 754152 90 - 2123299 ----UGCAACUGUAUUCGUACACGU-UUUGUAUCUGUAUCUGCU-GGUGCGCCUGCCAUGUGUAUCUUUUUGCUGUUGUGUAUCUCUAAAAUAAAA---- ----.(((((.(((...((((((((-...(((..((((((....-))))))..))).)))))))).....))).))))).................---- ( -21.30, z-score = -3.12, R) >droYak2.chr3R 17230681 90 - 28832112 ----UGCCACUGUAUGUGUGCACGU-UUUGUAUCUGUAUCUGCU-GGUGCGCCUGCCAUGUGUAUCUUUUUGCUGUUGUGUAUCUCUAAAAUAAAA---- ----.((.((.(((...((((((((-...(((..((((((....-))))))..))).)))))))).....))).)).)).................---- ( -17.20, z-score = -0.80, R) >droEre2.scaffold_4770 8900421 90 - 17746568 ----UGCAACUGUAUUUGUACACGU-UUUGUAUCUGUAUCUGCU-GGUGCGCCUGCCAUGUGUAUCUUUUUGCUGUUGUGUAUCUCUAAAAUAAAA---- ----.(((((.(((...((((((((-...(((..((((((....-))))))..))).)))))))).....))).))))).................---- ( -21.30, z-score = -3.19, R) >droAna3.scaffold_13340 16584880 84 - 23697760 ---------CCGUCUCUGUCCGCAG-AAUGUAUCUGUAUCUGUUUGGUGCGCCUGCCAUGUGUAUCUUUU--GGUUUGUGUAUCUCAAAAAUAAAA---- ---------............((((-(.....)))))........(((((((..((((...........)--)))..)))))))............---- ( -17.00, z-score = -2.53, R) >dp4.chr2 17784487 79 + 30794189 ----CGCGCUCGCACUCACAUACGUGUGUGUAUCUGCAUCUGUU-GGUG-----------UGUAUCUCUU-GCGUUCGUGUAUCUCUAAAAUAAAA---- ----((((..(((((.((((....)))).))....(((((....-))))-----------).........-)))..))))................---- ( -18.20, z-score = -1.84, R) >droPer1.super_0 11640596 79 + 11822988 ----CGCGCUCGCACUCACAUACGUGUGUGUGUCUGCAUCUGAU-GGUG-----------UGUAUCUCUU-GCGUUCGUGUAUCUCUAAAAUAAAA---- ----((((..((((..((((((....))))))...(((((....-))))-----------)........)-)))..))))................---- ( -19.80, z-score = -1.87, R) >droVir3.scaffold_12855 9880397 98 - 10161210 GCUCCCUGGAUUCGGCUAUGUAUGUAUCACUAUCUGUAUACGUU-AAUGCGCCUGGCAUCCCUAUCUCCU-GGUUCUGUGUAUUCUCUACAUAAGAACGA .......((((((((((((..((((((.((.....)))))))).-.))).))).)).)))).........-.((((((((((.....))))).))))).. ( -21.30, z-score = -0.99, R) >consensus ____UGCAACUGUAUUCGUACACGU_UUUGUAUCUGUAUCUGCU_GGUGCGCCUGCCAUGUGUAUCUUUUUGCUGUUGUGUAUCUCUAAAAUAAAA____ ....((((((.((....(((((......)))))..(((((.....))))).....................)).)))))).................... ( -6.11 = -6.26 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:15 2011