| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,777,962 – 12,778,056 |
| Length | 94 |
| Max. P | 0.881733 |
| Location | 12,777,962 – 12,778,056 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 98.58 |
| Shannon entropy | 0.01954 |
| G+C content | 0.29787 |
| Mean single sequence MFE | -16.57 |
| Consensus MFE | -16.79 |
| Energy contribution | -16.57 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.35 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12777962 94 + 27905053 AAAGUCGAUAACAAUGUGAUUGUCUAGACUUCAAAAACAAAUUCCGUCUUAAAUUUGUAAGGGGUUUUUAUCGAUUUAAGUAGUUAAUAGCAGU .((((((((((((((...)))))..(((((((....(((((((........)))))))..))))))).)))))))))................. ( -15.90, z-score = -0.98, R) >droSim1.chr3R 18822065 94 - 27517382 AAAGUCGAUAACAAUGUGAUUGUCUAGACUUCAAAAACAAAUUCCGCCUUAAAUUUGUAAGAGGUUUUUAUCGAUUUAAGUAGUUAAUAGCAGU .((((((((((((((...)))))..(((((((....(((((((........)))))))..))))))).)))))))))................. ( -16.90, z-score = -1.53, R) >droSec1.super_12 745777 94 - 2123299 AAAGUCGAUAACAAUGUGAUUGUCUAGACUUCAAAAACAAAUUCCGCCUUAAAUUUGUAAGAGGUUUUUAUCGAUUUAAGUAGUUAAUAGCAGU .((((((((((((((...)))))..(((((((....(((((((........)))))))..))))))).)))))))))................. ( -16.90, z-score = -1.53, R) >consensus AAAGUCGAUAACAAUGUGAUUGUCUAGACUUCAAAAACAAAUUCCGCCUUAAAUUUGUAAGAGGUUUUUAUCGAUUUAAGUAGUUAAUAGCAGU .((((((((((((((...)))))..(((((((....(((((((........)))))))..))))))).)))))))))................. (-16.79 = -16.57 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:14 2011