| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,774,865 – 12,774,955 |
| Length | 90 |
| Max. P | 0.766240 |
| Location | 12,774,865 – 12,774,955 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 88.55 |
| Shannon entropy | 0.19458 |
| G+C content | 0.47385 |
| Mean single sequence MFE | -19.80 |
| Consensus MFE | -17.86 |
| Energy contribution | -18.06 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.766240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12774865 90 + 27905053 UGACGAGUUUUUAAACGAUUGUAAAACUCUUUC-CUCCGCACACUC----------------UGAAACACAACGGGCUUUCCUCGCUUUUACGAUUGCGAGGGCCAU ....(((((((...........)))))))....-............----------------............(((...((((((..........))))))))).. ( -19.40, z-score = -1.14, R) >droSim1.chr3R 18819046 100 - 27517382 UGACGAGUUUUUAAACGAUUGUAAAACUCUUUC-CCCCGCACACUCACGCACACUC------UACAACACAACGGGCUUUCCUCGCUUUUACGAUUGCGAGGGCCAU ....(((((((...........)))))))....-....((........))......------............(((...((((((..........))))))))).. ( -20.70, z-score = -1.68, R) >droSec1.super_12 742793 100 - 2123299 UGACGAGUUUUUAAACGAUUGUAAAACUCUUUC-CCCCGCACACUCACACACACUC------UGAAACACAACGGGCUUUCCUCGCUUUUACGAUUGCGAGGGCCAU ....(((((((...........)))))))....-.((((.....(((.........------))).......))))...(((((((..........))))))).... ( -19.50, z-score = -1.26, R) >droYak2.chr3R 17219245 106 - 28832112 UGACGAGUUUUUAAACGAUUGUAAAACUCUUUC-CCCCGCACACUCACGCACACUCGCACACUCAAACACAACGGGCUUUCCUCGCUUUUACGAUUGCGAGGGCCAU (((.(((((((...........)))))))....-..............((......))....))).........(((...((((((..........))))))))).. ( -21.20, z-score = -1.27, R) >droEre2.scaffold_4770 8888930 93 - 17746568 UGACGAGUUUUUAAACGAUUGUAAAACUCUUUCUCCCCGCACACGCACAC--------------ACACACAACGGACUUUCCUCGCUUUUACGAUUGCGAGGGCCAU ....(((((((...........))))))).........((....))....--------------.........((....(((((((..........))))))))).. ( -18.20, z-score = -1.47, R) >consensus UGACGAGUUUUUAAACGAUUGUAAAACUCUUUC_CCCCGCACACUCACACACACUC______UGAAACACAACGGGCUUUCCUCGCUUUUACGAUUGCGAGGGCCAU ....(((((((...........))))))).............................................(((...((((((..........))))))))).. (-17.86 = -18.06 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:13 2011