| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,711,943 – 12,712,041 |
| Length | 98 |
| Max. P | 0.919006 |
| Location | 12,711,943 – 12,712,041 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 90.71 |
| Shannon entropy | 0.16974 |
| G+C content | 0.35491 |
| Mean single sequence MFE | -23.74 |
| Consensus MFE | -20.66 |
| Energy contribution | -21.50 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.919006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12711943 98 - 27905053 ACCAUAGAGCACCACAUUGGGUGUAUUAUUUUUGUACGACUAUAUGCGUGCUGGGGCACAUUUAUUUACAUUUUUUAAUGCACCCAAUAAAGAAAACA ...............(((((((((((((....((((.....(((...((((....))))...))).)))).....))))))))))))).......... ( -24.60, z-score = -2.40, R) >droSim1.chr3R 18756240 98 + 27517382 ACCAUAGAGCAACACAUCGGGUGUAUUAUUUUUGUACGAGUAUAUGCGUGCUGGGGCACAUUUAUUUACAUUUUUUAAUGCACCCAAUAAAGAAAACA ..................((((((((((....((((...((....))((((....)))).......)))).....))))))))))............. ( -23.20, z-score = -1.86, R) >droSec1.super_12 680562 98 + 2123299 ACCAUAGAGCACCACAUUGGGUGUAUUAUUUUUGUAGGAGUAAAUGCGUGCUGGGGCACAUUUAUUUACAUUUUUUAAUGCACCCAAUAAAGAAAACA ...............(((((((((((((....(((((..((((((..((((....))))))))))))))).....))))))))))))).......... ( -28.00, z-score = -2.93, R) >droYak2.chr3R 17154360 86 + 28832112 -----------AC-CAUAGAGUGUAUUAUUUUUGUACGAGUAUAUGCGUGCUGGGGCACAUUUAUUUACAUUUUUUAAUGCACCCAAUAAAGAAAACA -----------..-....(.((((((((....((((...((....))((((....)))).......)))).....)))))))).)............. ( -16.20, z-score = -0.71, R) >droEre2.scaffold_4770 8824987 98 + 17746568 ACCAUAGAGCACCGCAUUGGGUGUAUUAUUUUUGUGAGAGUAUAUGCGUGCUGGGGCCCAUUUAUUUACAUUUUUUAAUGCACCCAAUAAAGAAAACA ...............(((((((((((((.....(((.(((((.(((.(.((....)))))).))))).)))....))))))))))))).......... ( -26.70, z-score = -2.03, R) >consensus ACCAUAGAGCACCACAUUGGGUGUAUUAUUUUUGUACGAGUAUAUGCGUGCUGGGGCACAUUUAUUUACAUUUUUUAAUGCACCCAAUAAAGAAAACA ...............(((((((((((((....((((...((....))((((....)))).......)))).....))))))))))))).......... (-20.66 = -21.50 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:21:07 2011