| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,668,896 – 7,668,986 |
| Length | 90 |
| Max. P | 0.896496 |
| Location | 7,668,896 – 7,668,986 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 77.63 |
| Shannon entropy | 0.43928 |
| G+C content | 0.36183 |
| Mean single sequence MFE | -22.23 |
| Consensus MFE | -10.39 |
| Energy contribution | -12.75 |
| Covariance contribution | 2.36 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.896496 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7668896 90 + 23011544 GGAAUUGAUAUUUCGCUUUGAUUUAAUGAAGGGAUGUGGCUUAUUUUUAAUGCGAAUCUAAGAAGUUAAGUCAACUGCGGAAAUUCCUUG ((((((.....(((((.((((((((((....((((.(.(((((....))).)).))))).....))))))))))..)))))))))))... ( -24.20, z-score = -2.99, R) >droAna3.scaffold_12916 15617387 84 + 16180835 CGGUUGGGGAUUCCGCAAUGAGUCAAUGA------GUCGUUUAUCUUGAAUGCGAGGCUGAGAAGUUAAGUCAACCGUGGAAAAUCCUUG .....((((((((((((((((.((...))------.)))))..............((((.........))))....)))))..)))))). ( -19.10, z-score = 0.10, R) >droEre2.scaffold_4929 16597978 75 + 26641161 CAGUUUGAUAUUCCGCUUUGAUUUAAUGAAAGGAUGUGGAUUAUUUUUAAUGCGAUUCUAGAAAGUUAAGUCACU--------------- ..................(((((((((...(((((.((.((((....)))).))))))).....)))))))))..--------------- ( -12.30, z-score = -0.30, R) >droYak2.chr2L 17101062 90 - 22324452 UGGUUGGAUACUCCGCAUUGAUUUAAUAAAAGGAUGUGGAUUAUUUUUAAUGCCAAUCUAAGAUGUUAAGUCAACUGCGGAAAUUUCAAG ...(((((...(((((((((((((((((...((((.(((((((....)))).)))))))....))))))))))).))))))...))))). ( -28.80, z-score = -4.81, R) >droSec1.super_3 3183196 90 + 7220098 GGGAUUGAUAUUCCGCCUUGAUUUAAUGAAAGGAUGUGGCUUAUUUUUAAUGCGAAUCUAAGAUGUUAAGUCAACUGCGGAAAUUCCUAG ((((((.....(((((.((((((((((....((((.(.(((((....))).)).))))).....))))))))))..)))))))))))... ( -23.50, z-score = -2.37, R) >droSim1.chr2L 7466622 90 + 22036055 GGGAUUGAUAUUCCGCUUUGAUUUAAUGAAAGGAUGUGGCUUAUUUUUAAUGCGAAUCUAAGAAGUUAAGUCAACUGCGGAAAUUCCUAG ((((((.....(((((.((((((((((....((((.(.(((((....))).)).))))).....))))))))))..)))))))))))... ( -25.50, z-score = -3.20, R) >consensus GGGAUUGAUAUUCCGCUUUGAUUUAAUGAAAGGAUGUGGCUUAUUUUUAAUGCGAAUCUAAGAAGUUAAGUCAACUGCGGAAAUUCCUAG ..........((((((..(((((((((....((((...((...........))..)))).....)))))))))...))))))........ (-10.39 = -12.75 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:13 2011