Locus 10281

Sequence ID	dm3.chr3R
Location	12,660,258 – 12,660,371
Length	113
Max. P	0.809217

overview

Window 5

Location	12,660,258 – 12,660,371
Length	113
Sequences	12
Columns	120
Reading direction	reverse
Mean pairwise identity	96.84
Shannon entropy	0.06671
G+C content	0.40569
Mean single sequence MFE	-24.31
Consensus MFE	-20.06
Energy contribution	-20.14
Covariance contribution	0.08
Combinations/Pair	1.00
Mean z-score	-2.26
Structure conservation index	0.83
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.76
SVM RNA-class probability	0.809217
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 12660258 113 - 27905053
ACACCA--CUUGGCCAUAUUUUACCGCUUUUAAGCAGCGCGUAAAUACUCACGCUUACUGCA-----AGAGUCCAUUAAACGGUCGUAAAAACUUUACGAUUCCCAAUAUGAGAUUCUCU
...((.--...))....................((((.((((........))))...)))).-----(((((((((.....((((((((.....))))))))......))).)))))).. ( -23.40, z-score =  -2.18, R)
>droSim1.chr3R 18704583 113 + 27517382
ACACCA--CUUGGCCAUAUUUUACCGCUUUUAAGCAGCGCGUAAAUACUCACGCUUACUGCA-----AGAGUCCAUUAAACGGUCGUAAAAACUUUACGAUUCCCAAUAUGAGAUUCUCU
...((.--...))....................((((.((((........))))...)))).-----(((((((((.....((((((((.....))))))))......))).)))))).. ( -23.40, z-score =  -2.18, R)
>droSec1.super_12 629590 113 + 2123299
ACACCA--CUUGGCCAUAUUUUACCGCUUUUAAGCAGCGCGUAAAUACUCACGCUUACGGCA-----AGAGUCCAUUAAACGGUCGUAAAAACUUUACGAUUCCCAAUAUGAGAUUCUCU
......--....(((..........(((....)))...((((........))))....))).-----(((((((((.....((((((((.....))))))))......))).)))))).. ( -25.70, z-score =  -2.53, R)
>droYak2.chr3R 17100863 113 + 28832112
ACAGCA--CUUGGCCAUAUUUUACCGCUUUUAAGCAGCGCGUAAAUACUCACGCUUACUGCA-----AGAGUCCAUUAAACGGUCGUAAAAACUUUACGAUUCCCAAUAUGAGAUUCUCU
...(((--...(((.....(((((((((.......)))).))))).......)))...))).-----(((((((((.....((((((((.....))))))))......))).)))))).. ( -26.90, z-score =  -2.81, R)
>droEre2.scaffold_4770 8772069 113 + 17746568
ACACCA--CUUGGCCAUAUUUUACCGCUUUUAAGCAGCGCGUAAAUACUCACGCUUACUGCA-----AGAGUCCAUUAAACGGUCGUAAAAACUUUACGAUUCCCAAUAUGAGAUUCUCU
...((.--...))....................((((.((((........))))...)))).-----(((((((((.....((((((((.....))))))))......))).)))))).. ( -23.40, z-score =  -2.18, R)
>droAna3.scaffold_13340 16461435 113 + 23697760
ACACCA--CUUGGCCAUAUUUUACCGCUUUUAAGCAGCGCGUAAAUACUCACGCUUACUGCA-----AGAGUCCAUUAAACGGUCGUAAAAACUUUACGAUUCCCAAUAUGAGAUUCUCU
...((.--...))....................((((.((((........))))...)))).-----(((((((((.....((((((((.....))))))))......))).)))))).. ( -23.40, z-score =  -2.18, R)
>dp4.chr2 17648003 118 - 30794189
ACAGCA--CUUGGCCAUAUUUUACCGCUUUUAAGCAGCGCGUAAAUACUCACGCUUACUGCAAGAGUAGAGUCCAUUAAACGGUCGUAAAAACUUUACGAUUCCCAAUAUGAGAUUCUCU
...(((--...(((.....(((((((((.......)))).))))).......)))...)))...((.(((((((((.....((((((((.....))))))))......))).)))))))) ( -27.60, z-score =  -2.20, R)
>droPer1.super_0 11502176 118 - 11822988
ACAGCA--CUUGGCCAUAUUUUACCGCUUUUAAGCAGCGCGUAAAUACUCACGCUUACUGCAAGAGUAGAGUCCAUUAAACGGUCGUAAAAACUUUACGAUUCCCAAUAUGAGAUUCUCU
...(((--...(((.....(((((((((.......)))).))))).......)))...)))...((.(((((((((.....((((((((.....))))))))......))).)))))))) ( -27.60, z-score =  -2.20, R)
>droWil1.scaffold_181130 11730222 115 + 16660200
AUACCACUCUCGGCCAUAUUUUACCGCUUUUAAGCAGCGCGUAAAUACUCACGCUUACUGCA-----AGAGUCCAUUAAACGCUCGUAAAAACUUUACGAUUCCCAAUAUGAGAUUCUCU
.......(((((((.....(((((((((.......)))).))))).((((..((.....)).-----.)))).........))((((((.....)))))).........)))))...... ( -21.60, z-score =  -1.97, R)
>droVir3.scaffold_12855 9721729 113 + 10161210
ACACCA--CUUGGCCAUAUUUUACCGCUUUUAAGCAGCGCGUAAAUACUCACGCUUACUGCA-----AGAGUCCAUUAAACGGUCGUAAAAACUUUACGAUUCUCAAUAUGAGAUUCUCU
......--...((((....(((((((((.......)))).))))).((((..((.....)).-----.)))).........))))((((.....))))((.((((.....)))).))... ( -25.20, z-score =  -2.71, R)
>droMoj3.scaffold_6540 1918108 113 - 34148556
ACACCA--CUUGGCCAUAUUUUACCGCUUUUAAGCAGCGCGUAAAUACUCACGCUUACUGCA-----AGAGUCCAUUAAACGCUCGUAAAAACUUUACGAUUCUCAAUAUGAGAUUCUCU
...((.--...)).....((((((.(((....)))((((..(((..((((..((.....)).-----.))))...)))..)))).)))))).......((.((((.....)))).))... ( -22.30, z-score =  -2.11, R)
>droGri2.scaffold_14906 12783199 113 - 14172833
ACACCA--CUUGGCCAUAUUUUACCGCUUUUAAGCAGCGCGUAAAUACUCACGCUUACUGCA-----AGAGUCCAUUAAACGCUCGUAAAAAUUUUACGAUUCCCAAUAUGAGAUUCUCU
...((.--...))....................((((.((((........))))...)))).-----(((((((((.......((((((.....))))))........))).)))))).. ( -21.16, z-score =  -1.90, R)
>consensus
ACACCA__CUUGGCCAUAUUUUACCGCUUUUAAGCAGCGCGUAAAUACUCACGCUUACUGCA_____AGAGUCCAUUAAACGGUCGUAAAAACUUUACGAUUCCCAAUAUGAGAUUCUCU
.................................((((.((((........))))...))))......(((((((((.......((((((.....))))))........))).)))))).. (-20.06 = -20.14 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:54 2011