| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,653,194 – 12,653,288 |
| Length | 94 |
| Max. P | 0.649495 |
| Location | 12,653,194 – 12,653,288 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 73.32 |
| Shannon entropy | 0.40570 |
| G+C content | 0.62623 |
| Mean single sequence MFE | -39.58 |
| Consensus MFE | -26.74 |
| Energy contribution | -25.30 |
| Covariance contribution | -1.44 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.649495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12653194 94 + 27905053 ------------------GGCAACUGCGGCGGCGGCUAGUUUGCUAAUGUGGUGUUGUUGCUGCUGUAGCUGAAGAGCGGCCGAGAGCGAGGAGUAUUGGUGGUGGUGUUGC ------------------.(((((((((((((((((....(..(....)..)....))))))))))))........((.(((((..((.....)).))))).))...))))) ( -35.10, z-score = -1.52, R) >droSec1.super_12 622564 91 - 2123299 ------------------GGCAACUGCGGCGGCGGCUAGUUUGCUAAUGUGGUGUUGUUGCUGCUGUAGCUGAAGAGCGGCCGAGAGCGAGGAGUAUUGGUGGUGGUGC--- ------------------..((.(((((((((((((....(..(....)..)....))))))))))))).))....((.(((((..((.....)).))))).)).....--- ( -33.90, z-score = -1.31, R) >droSim1.chr3R 18695038 91 - 27517382 ------------------GGCAACUGCGGCGGCGGCUAGUUUGCUAAUGUGGUGUUGUUGCUGCUGUAGCUGAAGAGCGGCCGAGAGCGAGGAGUAUUGGUGGUGGUGC--- ------------------..((.(((((((((((((....(..(....)..)....))))))))))))).))....((.(((((..((.....)).))))).)).....--- ( -33.90, z-score = -1.31, R) >dp4.chr2 17640210 103 + 30794189 GGAGCCCUGGGAGUUGACGGCGGCCGCGGCGGCGGCUAGCUUGUUGAUGU---GCUGCUGCUGCUGCAGCUGGAGGGCAGCGGAAAGCGAGGAGUACUGCGACUGC------ ...(((((...(((((.(((((((.((((((.((((......))))...)---))))).))))))))))))..))))).((((...((.((.....))))..))))------ ( -47.50, z-score = -0.99, R) >droPer1.super_0 11493552 103 + 11822988 GGAGCCCUGGGAGUUGACGGCGGCCGCGGCGGCGGCUAGCUUGUUGAUGU---GCUGCUGCUGCUGCAGCUGGAGGGCAGCGGAAAGCGAGGAGUACUGCGACUGC------ ...(((((...(((((.(((((((.((((((.((((......))))...)---))))).))))))))))))..))))).((((...((.((.....))))..))))------ ( -47.50, z-score = -0.99, R) >consensus __________________GGCAACUGCGGCGGCGGCUAGUUUGCUAAUGUGGUGUUGUUGCUGCUGUAGCUGAAGAGCGGCCGAGAGCGAGGAGUAUUGGUGGUGGUG____ ...................((.((.(((((((((((..((........))...))))))))))).)).((((.....)))).....))........................ (-26.74 = -25.30 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:20:52 2011